Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02579

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02575 and BACOVA_02576 are separated by 35 nucleotidesBACOVA_02576 and BACOVA_02577 are separated by 143 nucleotidesBACOVA_02577 and BACOVA_02578 are separated by 162 nucleotidesBACOVA_02578 and BACOVA_02579 are separated by 120 nucleotidesBACOVA_02579 and BACOVA_02580 are separated by 63 nucleotides BACOVA_02575: BACOVA_02575 - tRNA-Pro, at 343,028 to 343,102 _02575 BACOVA_02576: BACOVA_02576 - tRNA-Pro, at 343,138 to 343,212 _02576 BACOVA_02577: BACOVA_02577 - hypothetical protein, at 343,356 to 343,523 _02577 BACOVA_02578: BACOVA_02578 - hypothetical protein, at 343,686 to 343,814 _02578 BACOVA_02579: BACOVA_02579 - hypothetical protein, at 343,935 to 344,141 _02579 BACOVA_02580: BACOVA_02580 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 344,205 to 345,476 _02580 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1at 342.948 kb on - strandat 342.954 kb on - strandat 342.959 kb on - strandat 342.962 kb on + strandat 342.963 kb on - strandat 342.980 kb on - strandat 342.982 kb on + strandat 342.988 kb on + strandat 342.989 kb on - strandat 342.989 kb on - strandat 343.118 kb on - strandat 343.120 kb on + strandat 343.120 kb on + strandat 343.439 kb on + strand, within BACOVA_02577at 343.656 kb on + strandat 343.657 kb on - strandat 343.657 kb on - strandat 343.784 kb on + strand, within BACOVA_02578at 343.784 kb on + strand, within BACOVA_02578at 343.789 kb on + strand, within BACOVA_02578at 343.804 kb on - strandat 343.815 kb on - strandat 343.841 kb on - strandat 343.847 kb on - strandat 343.872 kb on + strandat 343.894 kb on + strandat 343.895 kb on - strandat 344.072 kb on + strand, within BACOVA_02579at 344.073 kb on - strand, within BACOVA_02579at 344.115 kb on - strand, within BACOVA_02579at 344.129 kb on + strandat 344.130 kb on - strandat 344.132 kb on + strandat 344.139 kb on + strandat 344.140 kb on - strandat 344.153 kb on - strandat 344.164 kb on + strandat 344.264 kb on + strandat 344.264 kb on + strandat 344.265 kb on - strandat 344.374 kb on - strand, within BACOVA_02580at 344.397 kb on + strand, within BACOVA_02580at 344.397 kb on + strand, within BACOVA_02580at 344.397 kb on + strand, within BACOVA_02580at 344.398 kb on - strand, within BACOVA_02580at 344.448 kb on - strand, within BACOVA_02580at 344.508 kb on + strand, within BACOVA_02580at 344.523 kb on + strand, within BACOVA_02580at 344.527 kb on + strand, within BACOVA_02580at 344.527 kb on + strand, within BACOVA_02580at 344.530 kb on - strand, within BACOVA_02580at 344.564 kb on + strand, within BACOVA_02580at 344.616 kb on + strand, within BACOVA_02580at 344.622 kb on - strand, within BACOVA_02580at 344.724 kb on - strand, within BACOVA_02580at 344.731 kb on + strand, within BACOVA_02580at 344.731 kb on + strand, within BACOVA_02580at 344.732 kb on - strand, within BACOVA_02580at 344.792 kb on + strand, within BACOVA_02580at 344.792 kb on + strand, within BACOVA_02580at 344.829 kb on + strand, within BACOVA_02580at 344.925 kb on - strand, within BACOVA_02580at 344.993 kb on + strand, within BACOVA_02580at 344.993 kb on + strand, within BACOVA_02580at 344.993 kb on + strand, within BACOVA_02580at 344.994 kb on - strand, within BACOVA_02580at 344.994 kb on - strand, within BACOVA_02580at 344.994 kb on - strand, within BACOVA_02580at 345.039 kb on + strand, within BACOVA_02580at 345.116 kb on + strand, within BACOVA_02580at 345.117 kb on - strand, within BACOVA_02580at 345.117 kb on - strand, within BACOVA_02580at 345.120 kb on + strand, within BACOVA_02580at 345.121 kb on - strand, within BACOVA_02580at 345.121 kb on - strand, within BACOVA_02580at 345.126 kb on - strand, within BACOVA_02580

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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342,948 - +1.2
342,954 - -0.5
342,959 - -3.3
342,962 + +0.5
342,963 - -1.8
342,980 - +0.6
342,982 + -1.3
342,988 + -0.4
342,989 - -0.3
342,989 - -1.1
343,118 - +0.5
343,120 + -0.5
343,120 + +0.5
343,439 + BACOVA_02577 0.49 -1.7
343,656 + -0.3
343,657 - +0.3
343,657 - +0.6
343,784 + BACOVA_02578 0.76 -0.9
343,784 + BACOVA_02578 0.76 -2.7
343,789 + BACOVA_02578 0.80 +0.1
343,804 - +0.3
343,815 - -0.1
343,841 - -0.9
343,847 - +1.7
343,872 + -0.5
343,894 + +0.3
343,895 - -0.7
344,072 + BACOVA_02579 0.66 -0.2
344,073 - BACOVA_02579 0.67 -0.4
344,115 - BACOVA_02579 0.87 -1.9
344,129 + +0.7
344,130 - -0.6
344,132 + +0.1
344,139 + +1.7
344,140 - -0.4
344,153 - -0.5
344,164 + +1.4
344,264 + -0.8
344,264 + -0.5
344,265 - +0.2
344,374 - BACOVA_02580 0.13 +0.5
344,397 + BACOVA_02580 0.15 -0.8
344,397 + BACOVA_02580 0.15 -1.3
344,397 + BACOVA_02580 0.15 -0.2
344,398 - BACOVA_02580 0.15 -1.0
344,448 - BACOVA_02580 0.19 -1.5
344,508 + BACOVA_02580 0.24 +0.4
344,523 + BACOVA_02580 0.25 +0.3
344,527 + BACOVA_02580 0.25 +0.0
344,527 + BACOVA_02580 0.25 -1.5
344,530 - BACOVA_02580 0.26 +0.3
344,564 + BACOVA_02580 0.28 +0.9
344,616 + BACOVA_02580 0.32 -0.5
344,622 - BACOVA_02580 0.33 -1.9
344,724 - BACOVA_02580 0.41 +0.9
344,731 + BACOVA_02580 0.41 +0.8
344,731 + BACOVA_02580 0.41 -1.8
344,732 - BACOVA_02580 0.41 +0.6
344,792 + BACOVA_02580 0.46 -0.4
344,792 + BACOVA_02580 0.46 +0.7
344,829 + BACOVA_02580 0.49 +0.1
344,925 - BACOVA_02580 0.57 -0.1
344,993 + BACOVA_02580 0.62 +1.2
344,993 + BACOVA_02580 0.62 -0.3
344,993 + BACOVA_02580 0.62 -0.6
344,994 - BACOVA_02580 0.62 -0.4
344,994 - BACOVA_02580 0.62 -1.3
344,994 - BACOVA_02580 0.62 -0.1
345,039 + BACOVA_02580 0.66 +0.5
345,116 + BACOVA_02580 0.72 +0.4
345,117 - BACOVA_02580 0.72 +0.7
345,117 - BACOVA_02580 0.72 +1.6
345,120 + BACOVA_02580 0.72 -1.0
345,121 - BACOVA_02580 0.72 -0.5
345,121 - BACOVA_02580 0.72 -1.5
345,126 - BACOVA_02580 0.72 +1.3

Or see this region's nucleotide sequence