Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02435

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02433 and BACOVA_02435 are separated by 104 nucleotidesBACOVA_02435 and BACOVA_02434 overlap by 17 nucleotides BACOVA_02433: BACOVA_02433 - transcriptional regulator, AraC family, at 197,824 to 198,726 _02433 BACOVA_02435: BACOVA_02435 - hypothetical protein, at 198,831 to 198,947 _02435 BACOVA_02434: BACOVA_02434 - NAD dependent epimerase/dehydratase family protein, at 198,931 to 199,938 _02434 Position (kb) 198 199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 197.841 kb on - strandat 197.841 kb on - strandat 197.916 kb on - strand, within BACOVA_02433at 197.916 kb on - strand, within BACOVA_02433at 197.974 kb on - strand, within BACOVA_02433at 197.990 kb on + strand, within BACOVA_02433at 197.991 kb on - strand, within BACOVA_02433at 198.131 kb on - strand, within BACOVA_02433at 198.145 kb on - strand, within BACOVA_02433at 198.151 kb on + strand, within BACOVA_02433at 198.152 kb on - strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.178 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.210 kb on - strand, within BACOVA_02433at 198.217 kb on + strand, within BACOVA_02433at 198.241 kb on - strand, within BACOVA_02433at 198.267 kb on + strand, within BACOVA_02433at 198.268 kb on - strand, within BACOVA_02433at 198.295 kb on + strand, within BACOVA_02433at 198.296 kb on - strand, within BACOVA_02433at 198.356 kb on + strand, within BACOVA_02433at 198.391 kb on + strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.600 kb on + strand, within BACOVA_02433at 198.606 kb on + strand, within BACOVA_02433at 198.609 kb on - strand, within BACOVA_02433at 198.624 kb on + strand, within BACOVA_02433at 198.643 kb on + strandat 198.644 kb on - strandat 198.648 kb on + strandat 198.652 kb on + strandat 198.716 kb on - strandat 198.737 kb on - strandat 198.755 kb on + strandat 198.756 kb on - strandat 198.771 kb on - strandat 198.800 kb on - strandat 198.827 kb on + strandat 198.829 kb on + strandat 198.836 kb on + strandat 198.898 kb on - strand, within BACOVA_02435at 198.898 kb on - strand, within BACOVA_02435at 198.914 kb on - strand, within BACOVA_02435at 198.915 kb on + strand, within BACOVA_02435at 198.930 kb on + strand, within BACOVA_02435at 198.941 kb on + strandat 198.961 kb on - strandat 198.964 kb on - strandat 198.969 kb on + strandat 198.978 kb on - strandat 199.012 kb on - strandat 199.118 kb on - strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.161 kb on - strand, within BACOVA_02434at 199.170 kb on + strand, within BACOVA_02434at 199.189 kb on - strand, within BACOVA_02434at 199.201 kb on + strand, within BACOVA_02434at 199.311 kb on - strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.390 kb on - strand, within BACOVA_02434at 199.425 kb on + strand, within BACOVA_02434at 199.602 kb on + strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.671 kb on - strand, within BACOVA_02434at 199.758 kb on + strand, within BACOVA_02434at 199.770 kb on - strand, within BACOVA_02434at 199.791 kb on + strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.832 kb on + strand, within BACOVA_02434at 199.837 kb on + strand, within BACOVA_02434at 199.838 kb on - strandat 199.899 kb on + strandat 199.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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197,841 - -0.2
197,841 - +1.6
197,916 - BACOVA_02433 0.10 +0.6
197,916 - BACOVA_02433 0.10 +0.0
197,974 - BACOVA_02433 0.17 +2.4
197,990 + BACOVA_02433 0.18 +1.7
197,991 - BACOVA_02433 0.18 +0.6
198,131 - BACOVA_02433 0.34 -2.5
198,145 - BACOVA_02433 0.36 -0.4
198,151 + BACOVA_02433 0.36 -0.3
198,152 - BACOVA_02433 0.36 +0.0
198,153 + BACOVA_02433 0.36 +0.8
198,153 + BACOVA_02433 0.36 +0.0
198,178 - BACOVA_02433 0.39 +1.3
198,205 - BACOVA_02433 0.42 +0.7
198,205 - BACOVA_02433 0.42 +1.7
198,205 - BACOVA_02433 0.42 +0.6
198,210 - BACOVA_02433 0.43 +0.9
198,217 + BACOVA_02433 0.44 -0.4
198,241 - BACOVA_02433 0.46 +1.1
198,267 + BACOVA_02433 0.49 -0.0
198,268 - BACOVA_02433 0.49 +1.0
198,295 + BACOVA_02433 0.52 +0.1
198,296 - BACOVA_02433 0.52 -0.2
198,356 + BACOVA_02433 0.59 -3.0
198,391 + BACOVA_02433 0.63 +0.5
198,425 - BACOVA_02433 0.67 -0.1
198,425 - BACOVA_02433 0.67 -0.4
198,600 + BACOVA_02433 0.86 -1.1
198,606 + BACOVA_02433 0.87 +0.4
198,609 - BACOVA_02433 0.87 -0.5
198,624 + BACOVA_02433 0.89 +0.2
198,643 + +1.4
198,644 - -0.6
198,648 + +0.8
198,652 + +1.5
198,716 - +1.1
198,737 - -0.5
198,755 + +1.4
198,756 - -2.3
198,771 - -1.9
198,800 - -0.1
198,827 + -1.1
198,829 + +0.8
198,836 + +0.7
198,898 - BACOVA_02435 0.57 -0.6
198,898 - BACOVA_02435 0.57 -1.2
198,914 - BACOVA_02435 0.71 -1.5
198,915 + BACOVA_02435 0.72 +1.0
198,930 + BACOVA_02435 0.85 +1.2
198,941 + -4.2
198,961 - -1.2
198,964 - -0.6
198,969 + -1.6
198,978 - -1.6
199,012 - -1.1
199,118 - BACOVA_02434 0.19 -3.7
199,160 + BACOVA_02434 0.23 -0.4
199,160 + BACOVA_02434 0.23 -1.4
199,161 - BACOVA_02434 0.23 -2.5
199,170 + BACOVA_02434 0.24 -1.1
199,189 - BACOVA_02434 0.26 -2.1
199,201 + BACOVA_02434 0.27 -3.8
199,311 - BACOVA_02434 0.38 -1.2
199,383 + BACOVA_02434 0.45 -1.1
199,383 + BACOVA_02434 0.45 -0.1
199,383 + BACOVA_02434 0.45 -1.9
199,387 + BACOVA_02434 0.45 -1.2
199,387 + BACOVA_02434 0.45 -1.8
199,390 - BACOVA_02434 0.46 +0.4
199,425 + BACOVA_02434 0.49 -3.2
199,602 + BACOVA_02434 0.67 -2.4
199,603 - BACOVA_02434 0.67 -1.6
199,603 - BACOVA_02434 0.67 -2.0
199,671 - BACOVA_02434 0.73 -1.2
199,758 + BACOVA_02434 0.82 -2.7
199,770 - BACOVA_02434 0.83 -3.0
199,791 + BACOVA_02434 0.85 -1.8
199,792 - BACOVA_02434 0.85 -1.5
199,792 - BACOVA_02434 0.85 -1.9
199,792 - BACOVA_02434 0.85 -0.4
199,800 + BACOVA_02434 0.86 -2.1
199,800 + BACOVA_02434 0.86 -0.9
199,800 + BACOVA_02434 0.86 -1.5
199,832 + BACOVA_02434 0.89 -2.7
199,837 + BACOVA_02434 0.90 -1.9
199,838 - -1.6
199,899 + -2.1
199,900 - -3.5

Or see this region's nucleotide sequence