Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02394

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02393 and BACOVA_02394 are separated by 97 nucleotidesBACOVA_02394 and BACOVA_02395 overlap by 20 nucleotides BACOVA_02393: BACOVA_02393 - Sigma-54 interaction domain protein, at 157,115 to 158,455 _02393 BACOVA_02394: BACOVA_02394 - hypothetical protein, at 158,553 to 159,356 _02394 BACOVA_02395: BACOVA_02395 - Ser/Thr phosphatase family protein, at 159,337 to 160,143 _02395 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.607 kb on + strand, within BACOVA_02393at 157.608 kb on - strand, within BACOVA_02393at 157.608 kb on - strand, within BACOVA_02393at 157.608 kb on - strand, within BACOVA_02393at 157.639 kb on + strand, within BACOVA_02393at 157.759 kb on + strand, within BACOVA_02393at 157.759 kb on + strand, within BACOVA_02393at 157.799 kb on + strand, within BACOVA_02393at 157.799 kb on + strand, within BACOVA_02393at 157.800 kb on - strand, within BACOVA_02393at 157.801 kb on + strand, within BACOVA_02393at 157.870 kb on + strand, within BACOVA_02393at 157.870 kb on + strand, within BACOVA_02393at 158.135 kb on - strand, within BACOVA_02393at 158.155 kb on + strand, within BACOVA_02393at 158.155 kb on + strand, within BACOVA_02393at 158.155 kb on + strand, within BACOVA_02393at 158.156 kb on - strand, within BACOVA_02393at 158.187 kb on + strand, within BACOVA_02393at 158.187 kb on + strand, within BACOVA_02393at 158.188 kb on - strand, within BACOVA_02393at 158.241 kb on - strand, within BACOVA_02393at 158.249 kb on + strand, within BACOVA_02393at 158.250 kb on - strand, within BACOVA_02393at 158.417 kb on - strandat 158.517 kb on - strandat 158.544 kb on + strandat 158.545 kb on - strandat 158.545 kb on - strandat 158.583 kb on + strandat 158.588 kb on + strandat 158.588 kb on + strandat 158.588 kb on + strandat 158.588 kb on + strandat 158.589 kb on - strandat 158.589 kb on - strandat 158.589 kb on - strandat 158.589 kb on - strandat 158.589 kb on - strandat 158.612 kb on - strandat 158.630 kb on + strandat 158.638 kb on + strand, within BACOVA_02394at 158.638 kb on + strand, within BACOVA_02394at 158.651 kb on + strand, within BACOVA_02394at 158.655 kb on + strand, within BACOVA_02394at 158.655 kb on + strand, within BACOVA_02394at 158.656 kb on - strand, within BACOVA_02394at 158.687 kb on + strand, within BACOVA_02394at 158.713 kb on + strand, within BACOVA_02394at 158.880 kb on - strand, within BACOVA_02394at 158.894 kb on + strand, within BACOVA_02394at 158.896 kb on + strand, within BACOVA_02394at 158.897 kb on - strand, within BACOVA_02394at 158.897 kb on - strand, within BACOVA_02394at 158.942 kb on - strand, within BACOVA_02394at 158.964 kb on + strand, within BACOVA_02394at 158.964 kb on + strand, within BACOVA_02394at 158.965 kb on - strand, within BACOVA_02394at 158.984 kb on + strand, within BACOVA_02394at 158.985 kb on - strand, within BACOVA_02394at 159.040 kb on + strand, within BACOVA_02394at 159.045 kb on + strand, within BACOVA_02394at 159.221 kb on + strand, within BACOVA_02394at 159.244 kb on + strand, within BACOVA_02394at 159.244 kb on + strand, within BACOVA_02394at 159.315 kb on + strandat 159.315 kb on + strandat 159.334 kb on + strandat 159.339 kb on - strandat 159.341 kb on + strandat 159.341 kb on + strandat 159.342 kb on - strandat 159.342 kb on - strandat 159.345 kb on + strandat 159.357 kb on - strandat 159.381 kb on + strandat 159.392 kb on + strandat 159.393 kb on - strandat 159.396 kb on + strandat 159.396 kb on + strandat 159.409 kb on - strandat 159.425 kb on + strand, within BACOVA_02395at 159.426 kb on - strand, within BACOVA_02395at 159.426 kb on - strand, within BACOVA_02395at 159.493 kb on + strand, within BACOVA_02395at 159.504 kb on - strand, within BACOVA_02395at 159.561 kb on - strand, within BACOVA_02395at 159.637 kb on - strand, within BACOVA_02395at 159.665 kb on + strand, within BACOVA_02395at 159.750 kb on - strand, within BACOVA_02395at 159.826 kb on - strand, within BACOVA_02395at 159.945 kb on - strand, within BACOVA_02395at 159.990 kb on + strand, within BACOVA_02395at 160.010 kb on - strand, within BACOVA_02395at 160.020 kb on + strand, within BACOVA_02395at 160.020 kb on + strand, within BACOVA_02395at 160.073 kb on + strandat 160.078 kb on + strandat 160.079 kb on - strandat 160.084 kb on - strandat 160.123 kb on + strandat 160.123 kb on + strandat 160.144 kb on + strandat 160.149 kb on + strandat 160.217 kb on + strandat 160.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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157,607 + BACOVA_02393 0.37 -1.5
157,608 - BACOVA_02393 0.37 -1.9
157,608 - BACOVA_02393 0.37 +0.9
157,608 - BACOVA_02393 0.37 -0.5
157,639 + BACOVA_02393 0.39 -0.4
157,759 + BACOVA_02393 0.48 -3.1
157,759 + BACOVA_02393 0.48 -0.5
157,799 + BACOVA_02393 0.51 +0.6
157,799 + BACOVA_02393 0.51 +0.5
157,800 - BACOVA_02393 0.51 -1.0
157,801 + BACOVA_02393 0.51 -0.8
157,870 + BACOVA_02393 0.56 -2.3
157,870 + BACOVA_02393 0.56 -0.0
158,135 - BACOVA_02393 0.76 -2.0
158,155 + BACOVA_02393 0.78 +0.1
158,155 + BACOVA_02393 0.78 -1.4
158,155 + BACOVA_02393 0.78 -2.0
158,156 - BACOVA_02393 0.78 -2.4
158,187 + BACOVA_02393 0.80 -0.4
158,187 + BACOVA_02393 0.80 +0.5
158,188 - BACOVA_02393 0.80 +0.5
158,241 - BACOVA_02393 0.84 -0.2
158,249 + BACOVA_02393 0.85 -1.7
158,250 - BACOVA_02393 0.85 +0.0
158,417 - -0.4
158,517 - -0.6
158,544 + +0.0
158,545 - +0.2
158,545 - +2.0
158,583 + +2.1
158,588 + -1.5
158,588 + +0.8
158,588 + -1.4
158,588 + +0.1
158,589 - +0.4
158,589 - -1.5
158,589 - -0.4
158,589 - -0.1
158,589 - -1.5
158,612 - +0.2
158,630 + +1.1
158,638 + BACOVA_02394 0.11 -0.2
158,638 + BACOVA_02394 0.11 -0.9
158,651 + BACOVA_02394 0.12 -2.0
158,655 + BACOVA_02394 0.13 -2.4
158,655 + BACOVA_02394 0.13 -1.9
158,656 - BACOVA_02394 0.13 +1.5
158,687 + BACOVA_02394 0.17 +0.2
158,713 + BACOVA_02394 0.20 -0.0
158,880 - BACOVA_02394 0.41 +0.7
158,894 + BACOVA_02394 0.42 -2.3
158,896 + BACOVA_02394 0.43 +0.1
158,897 - BACOVA_02394 0.43 -0.0
158,897 - BACOVA_02394 0.43 -0.5
158,942 - BACOVA_02394 0.48 -0.9
158,964 + BACOVA_02394 0.51 +0.6
158,964 + BACOVA_02394 0.51 -0.0
158,965 - BACOVA_02394 0.51 -0.1
158,984 + BACOVA_02394 0.54 -2.0
158,985 - BACOVA_02394 0.54 +0.2
159,040 + BACOVA_02394 0.61 +0.3
159,045 + BACOVA_02394 0.61 -0.1
159,221 + BACOVA_02394 0.83 -3.4
159,244 + BACOVA_02394 0.86 -1.1
159,244 + BACOVA_02394 0.86 -1.5
159,315 + +0.7
159,315 + -0.0
159,334 + -0.6
159,339 - -0.6
159,341 + +0.4
159,341 + +2.0
159,342 - -0.3
159,342 - -0.4
159,345 + +1.3
159,357 - +0.4
159,381 + +0.4
159,392 + -0.3
159,393 - +0.7
159,396 + -1.4
159,396 + -0.4
159,409 - -0.2
159,425 + BACOVA_02395 0.11 +0.5
159,426 - BACOVA_02395 0.11 +1.7
159,426 - BACOVA_02395 0.11 +2.0
159,493 + BACOVA_02395 0.19 -0.0
159,504 - BACOVA_02395 0.21 -0.4
159,561 - BACOVA_02395 0.28 -0.6
159,637 - BACOVA_02395 0.37 -0.6
159,665 + BACOVA_02395 0.41 +0.0
159,750 - BACOVA_02395 0.51 -0.6
159,826 - BACOVA_02395 0.61 -0.3
159,945 - BACOVA_02395 0.75 -3.3
159,990 + BACOVA_02395 0.81 -1.5
160,010 - BACOVA_02395 0.83 -0.0
160,020 + BACOVA_02395 0.85 -1.0
160,020 + BACOVA_02395 0.85 -1.2
160,073 + -0.9
160,078 + -1.7
160,079 - -0.4
160,084 - +0.2
160,123 + -0.2
160,123 + +1.0
160,144 + -0.5
160,149 + -0.9
160,217 + -1.5
160,217 + -0.0

Or see this region's nucleotide sequence