Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01914 and BACOVA_01915 are separated by 256 nucleotides BACOVA_01915 and BACOVA_01916 are separated by 115 nucleotides BACOVA_01916 and BACOVA_01917 are separated by 140 nucleotides BACOVA_01917 and BACOVA_01918 overlap by 37 nucleotides
BACOVA_01914: BACOVA_01914 - Sel1 repeat protein, at 122,323 to 124,821
_01914
BACOVA_01915: BACOVA_01915 - shikimate kinase, at 125,078 to 125,605
_01915
BACOVA_01916: BACOVA_01916 - hypothetical protein, at 125,721 to 126,323
_01916
BACOVA_01917: BACOVA_01917 - hypothetical protein, at 126,464 to 127,099
_01917
BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901
_01918
Position (kb) 125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 124.734 kb on + strand at 124.734 kb on + strand at 124.734 kb on + strand at 124.734 kb on + strand at 124.735 kb on - strand at 124.737 kb on - strand at 124.789 kb on + strand at 124.790 kb on - strand at 124.824 kb on + strand at 124.827 kb on - strand at 124.834 kb on + strand at 124.835 kb on - strand at 124.835 kb on - strand at 124.850 kb on + strand at 124.853 kb on + strand at 124.860 kb on + strand at 124.886 kb on + strand at 124.955 kb on - strand at 124.955 kb on - strand at 124.955 kb on - strand at 124.980 kb on + strand at 125.020 kb on + strand at 125.021 kb on - strand at 125.062 kb on - strand at 125.063 kb on + strand at 125.073 kb on + strand at 125.073 kb on + strand at 125.079 kb on + strand at 125.080 kb on - strand at 125.080 kb on - strand at 125.158 kb on + strand, within BACOVA_01915 at 125.236 kb on + strand, within BACOVA_01915 at 125.248 kb on + strand, within BACOVA_01915 at 125.292 kb on + strand, within BACOVA_01915 at 125.348 kb on - strand, within BACOVA_01915 at 125.501 kb on - strand, within BACOVA_01915 at 125.596 kb on + strand at 125.597 kb on - strand at 125.605 kb on + strand at 125.640 kb on - strand at 125.664 kb on - strand at 125.680 kb on + strand at 125.681 kb on - strand at 125.681 kb on - strand at 125.870 kb on + strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.871 kb on - strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.872 kb on + strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.873 kb on - strand, within BACOVA_01916 at 125.898 kb on + strand, within BACOVA_01916 at 125.922 kb on - strand, within BACOVA_01916 at 125.925 kb on + strand, within BACOVA_01916 at 125.926 kb on - strand, within BACOVA_01916 at 126.066 kb on + strand, within BACOVA_01916 at 126.066 kb on + strand, within BACOVA_01916 at 126.067 kb on - strand, within BACOVA_01916 at 126.067 kb on - strand, within BACOVA_01916 at 126.162 kb on + strand, within BACOVA_01916 at 126.162 kb on + strand, within BACOVA_01916 at 126.179 kb on + strand, within BACOVA_01916 at 126.254 kb on + strand, within BACOVA_01916 at 126.255 kb on - strand, within BACOVA_01916 at 126.255 kb on - strand, within BACOVA_01916 at 126.281 kb on - strand at 126.308 kb on + strand at 126.323 kb on + strand at 126.339 kb on - strand at 126.343 kb on + strand at 126.344 kb on - strand at 126.344 kb on - strand at 126.408 kb on + strand at 127.124 kb on + strand at 127.166 kb on + strand at 127.169 kb on + strand at 127.169 kb on + strand at 127.185 kb on + strand at 127.185 kb on + strand at 127.186 kb on - strand at 127.188 kb on + strand at 127.189 kb on - strand at 127.216 kb on + strand at 127.216 kb on + strand at 127.246 kb on - strand at 127.315 kb on + strand, within BACOVA_01918
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) remove 124,734 + +0.3 124,734 + -0.5 124,734 + -0.2 124,734 + -0.8 124,735 - +1.1 124,737 - -0.2 124,789 + -0.7 124,790 - -0.5 124,824 + +0.1 124,827 - +1.3 124,834 + -0.0 124,835 - -1.2 124,835 - +2.3 124,850 + -1.6 124,853 + +0.0 124,860 + +2.1 124,886 + +0.2 124,955 - -0.8 124,955 - -0.1 124,955 - -0.7 124,980 + -0.2 125,020 + -0.2 125,021 - +0.1 125,062 - -2.2 125,063 + +0.9 125,073 + -0.7 125,073 + -0.8 125,079 + +0.7 125,080 - +0.5 125,080 - +0.7 125,158 + BACOVA_01915 0.15 -2.0 125,236 + BACOVA_01915 0.30 -2.2 125,248 + BACOVA_01915 0.32 -1.6 125,292 + BACOVA_01915 0.41 -1.9 125,348 - BACOVA_01915 0.51 -1.2 125,501 - BACOVA_01915 0.80 -0.7 125,596 + -0.5 125,597 - -0.5 125,605 + -1.7 125,640 - -1.0 125,664 - -1.6 125,680 + +0.4 125,681 - -0.8 125,681 - -0.5 125,870 + BACOVA_01916 0.25 +1.3 125,871 - BACOVA_01916 0.25 -0.5 125,871 - BACOVA_01916 0.25 +1.1 125,871 - BACOVA_01916 0.25 -0.8 125,872 + BACOVA_01916 0.25 +0.1 125,872 + BACOVA_01916 0.25 +0.3 125,872 + BACOVA_01916 0.25 +2.5 125,873 - BACOVA_01916 0.25 -1.0 125,873 - BACOVA_01916 0.25 +0.3 125,873 - BACOVA_01916 0.25 -1.6 125,898 + BACOVA_01916 0.29 +1.3 125,922 - BACOVA_01916 0.33 +0.2 125,925 + BACOVA_01916 0.34 -0.0 125,926 - BACOVA_01916 0.34 +0.3 126,066 + BACOVA_01916 0.57 +0.3 126,066 + BACOVA_01916 0.57 -0.0 126,067 - BACOVA_01916 0.57 +0.9 126,067 - BACOVA_01916 0.57 +0.5 126,162 + BACOVA_01916 0.73 -0.2 126,162 + BACOVA_01916 0.73 -0.3 126,179 + BACOVA_01916 0.76 +1.6 126,254 + BACOVA_01916 0.88 +2.1 126,255 - BACOVA_01916 0.89 -0.0 126,255 - BACOVA_01916 0.89 +1.8 126,281 - -0.1 126,308 + -1.1 126,323 + +2.5 126,339 - -1.0 126,343 + +1.7 126,344 - -0.4 126,344 - -2.7 126,408 + -1.0 127,124 + -0.1 127,166 + -0.9 127,169 + -4.2 127,169 + -2.2 127,185 + -3.0 127,185 + -3.3 127,186 - -2.7 127,188 + -4.3 127,189 - -2.8 127,216 + -3.8 127,216 + -2.4 127,246 - -3.5 127,315 + BACOVA_01918 0.14 -1.7
Or see this region's nucleotide sequence