Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01642 and BACOVA_01643 are separated by 115 nucleotides BACOVA_01643 and BACOVA_01644 are separated by 51 nucleotides BACOVA_01644 and BACOVA_01645 are separated by 139 nucleotides BACOVA_01645 and BACOVA_01646 are separated by 165 nucleotides
BACOVA_01642: BACOVA_01642 - hypothetical protein, at 152,843 to 153,994
_01642
BACOVA_01643: BACOVA_01643 - prokaryotic transcription elongation factor, GreA/GreB domain protein, at 154,110 to 154,640
_01643
BACOVA_01644: BACOVA_01644 - histidine triad domain protein, at 154,692 to 155,084
_01644
BACOVA_01645: BACOVA_01645 - hypothetical protein, at 155,224 to 155,430
_01645
BACOVA_01646: BACOVA_01646 - hypothetical protein, at 155,596 to 155,727
_01646
Position (kb) 154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 153.110 kb on - strand, within BACOVA_01642 at 153.137 kb on + strand, within BACOVA_01642 at 153.137 kb on + strand, within BACOVA_01642 at 153.138 kb on - strand, within BACOVA_01642 at 153.152 kb on - strand, within BACOVA_01642 at 153.155 kb on - strand, within BACOVA_01642 at 153.155 kb on - strand, within BACOVA_01642 at 153.158 kb on + strand, within BACOVA_01642 at 153.158 kb on + strand, within BACOVA_01642 at 153.158 kb on + strand, within BACOVA_01642 at 153.159 kb on - strand, within BACOVA_01642 at 153.161 kb on - strand, within BACOVA_01642 at 153.188 kb on - strand, within BACOVA_01642 at 153.193 kb on - strand, within BACOVA_01642 at 153.271 kb on - strand, within BACOVA_01642 at 153.313 kb on + strand, within BACOVA_01642 at 153.313 kb on + strand, within BACOVA_01642 at 153.314 kb on - strand, within BACOVA_01642 at 153.314 kb on - strand, within BACOVA_01642 at 153.314 kb on - strand, within BACOVA_01642 at 153.317 kb on + strand, within BACOVA_01642 at 153.320 kb on - strand, within BACOVA_01642 at 153.400 kb on + strand, within BACOVA_01642 at 153.401 kb on - strand, within BACOVA_01642 at 153.401 kb on - strand, within BACOVA_01642 at 153.431 kb on - strand, within BACOVA_01642 at 153.431 kb on - strand, within BACOVA_01642 at 153.463 kb on + strand, within BACOVA_01642 at 153.464 kb on - strand, within BACOVA_01642 at 153.495 kb on + strand, within BACOVA_01642 at 153.495 kb on + strand, within BACOVA_01642 at 153.496 kb on - strand, within BACOVA_01642 at 153.512 kb on + strand, within BACOVA_01642 at 153.512 kb on + strand, within BACOVA_01642 at 153.513 kb on - strand, within BACOVA_01642 at 153.513 kb on - strand, within BACOVA_01642 at 153.514 kb on + strand, within BACOVA_01642 at 153.515 kb on - strand, within BACOVA_01642 at 153.518 kb on - strand, within BACOVA_01642 at 153.518 kb on - strand, within BACOVA_01642 at 153.522 kb on + strand, within BACOVA_01642 at 153.583 kb on + strand, within BACOVA_01642 at 153.583 kb on + strand, within BACOVA_01642 at 153.583 kb on + strand, within BACOVA_01642 at 153.591 kb on + strand, within BACOVA_01642 at 153.740 kb on + strand, within BACOVA_01642 at 153.741 kb on - strand, within BACOVA_01642 at 153.746 kb on - strand, within BACOVA_01642 at 153.746 kb on - strand, within BACOVA_01642 at 153.746 kb on - strand, within BACOVA_01642 at 153.749 kb on + strand, within BACOVA_01642 at 153.749 kb on + strand, within BACOVA_01642 at 153.749 kb on + strand, within BACOVA_01642 at 153.750 kb on - strand, within BACOVA_01642 at 153.772 kb on - strand, within BACOVA_01642 at 153.772 kb on - strand, within BACOVA_01642 at 153.773 kb on + strand, within BACOVA_01642 at 153.773 kb on + strand, within BACOVA_01642 at 153.774 kb on - strand, within BACOVA_01642 at 153.781 kb on - strand, within BACOVA_01642 at 153.804 kb on - strand, within BACOVA_01642 at 153.863 kb on + strand, within BACOVA_01642 at 153.876 kb on + strand, within BACOVA_01642 at 153.877 kb on - strand, within BACOVA_01642 at 153.883 kb on - strand at 153.884 kb on + strand at 153.885 kb on - strand at 153.887 kb on - strand at 153.925 kb on + strand at 153.925 kb on + strand at 153.993 kb on - strand at 154.012 kb on + strand at 154.013 kb on - strand at 154.066 kb on - strand at 154.182 kb on + strand, within BACOVA_01643 at 154.182 kb on + strand, within BACOVA_01643 at 154.182 kb on + strand, within BACOVA_01643 at 154.183 kb on - strand, within BACOVA_01643 at 154.183 kb on - strand, within BACOVA_01643 at 154.183 kb on - strand, within BACOVA_01643 at 154.184 kb on + strand, within BACOVA_01643 at 154.185 kb on - strand, within BACOVA_01643 at 154.284 kb on - strand, within BACOVA_01643 at 154.311 kb on + strand, within BACOVA_01643 at 154.311 kb on + strand, within BACOVA_01643 at 154.337 kb on + strand, within BACOVA_01643 at 154.337 kb on + strand, within BACOVA_01643 at 154.352 kb on + strand, within BACOVA_01643 at 154.403 kb on + strand, within BACOVA_01643 at 154.433 kb on - strand, within BACOVA_01643 at 154.433 kb on - strand, within BACOVA_01643 at 154.437 kb on - strand, within BACOVA_01643 at 154.480 kb on - strand, within BACOVA_01643 at 154.480 kb on - strand, within BACOVA_01643 at 154.481 kb on + strand, within BACOVA_01643 at 154.482 kb on - strand, within BACOVA_01643 at 154.579 kb on + strand, within BACOVA_01643 at 154.580 kb on - strand, within BACOVA_01643 at 154.589 kb on + strand at 154.604 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.643 kb on + strand at 154.644 kb on - strand at 154.674 kb on - strand at 154.702 kb on + strand at 154.702 kb on + strand at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.802 kb on + strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.803 kb on - strand, within BACOVA_01644 at 154.828 kb on + strand, within BACOVA_01644 at 154.829 kb on - strand, within BACOVA_01644 at 154.833 kb on + strand, within BACOVA_01644 at 154.834 kb on - strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.868 kb on + strand, within BACOVA_01644 at 154.957 kb on + strand, within BACOVA_01644 at 154.957 kb on + strand, within BACOVA_01644 at 154.970 kb on + strand, within BACOVA_01644 at 155.081 kb on - strand at 155.082 kb on + strand at 155.082 kb on + strand at 155.083 kb on - strand at 155.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C) remove 153,110 - BACOVA_01642 0.23 +0.4 153,137 + BACOVA_01642 0.26 -1.0 153,137 + BACOVA_01642 0.26 +0.3 153,138 - BACOVA_01642 0.26 +0.3 153,152 - BACOVA_01642 0.27 -0.1 153,155 - BACOVA_01642 0.27 +1.4 153,155 - BACOVA_01642 0.27 -0.2 153,158 + BACOVA_01642 0.27 +0.3 153,158 + BACOVA_01642 0.27 +2.7 153,158 + BACOVA_01642 0.27 -0.4 153,159 - BACOVA_01642 0.27 +1.1 153,161 - BACOVA_01642 0.28 -0.2 153,188 - BACOVA_01642 0.30 -0.5 153,193 - BACOVA_01642 0.30 -0.1 153,271 - BACOVA_01642 0.37 -0.5 153,313 + BACOVA_01642 0.41 +0.7 153,313 + BACOVA_01642 0.41 +1.4 153,314 - BACOVA_01642 0.41 +0.9 153,314 - BACOVA_01642 0.41 -0.2 153,314 - BACOVA_01642 0.41 -0.4 153,317 + BACOVA_01642 0.41 +0.1 153,320 - BACOVA_01642 0.41 -0.5 153,400 + BACOVA_01642 0.48 +0.6 153,401 - BACOVA_01642 0.48 -0.1 153,401 - BACOVA_01642 0.48 +0.1 153,431 - BACOVA_01642 0.51 -0.9 153,431 - BACOVA_01642 0.51 -1.2 153,463 + BACOVA_01642 0.54 +0.6 153,464 - BACOVA_01642 0.54 -0.2 153,495 + BACOVA_01642 0.57 -2.1 153,495 + BACOVA_01642 0.57 +1.8 153,496 - BACOVA_01642 0.57 +1.7 153,512 + BACOVA_01642 0.58 -0.7 153,512 + BACOVA_01642 0.58 +0.5 153,513 - BACOVA_01642 0.58 +0.2 153,513 - BACOVA_01642 0.58 +0.4 153,514 + BACOVA_01642 0.58 +0.7 153,515 - BACOVA_01642 0.58 -0.1 153,518 - BACOVA_01642 0.59 -2.5 153,518 - BACOVA_01642 0.59 -0.2 153,522 + BACOVA_01642 0.59 +0.5 153,583 + BACOVA_01642 0.64 -0.2 153,583 + BACOVA_01642 0.64 -0.7 153,583 + BACOVA_01642 0.64 -0.0 153,591 + BACOVA_01642 0.65 +2.5 153,740 + BACOVA_01642 0.78 +0.2 153,741 - BACOVA_01642 0.78 -1.1 153,746 - BACOVA_01642 0.78 -0.2 153,746 - BACOVA_01642 0.78 +0.3 153,746 - BACOVA_01642 0.78 -2.1 153,749 + BACOVA_01642 0.79 +1.1 153,749 + BACOVA_01642 0.79 +1.2 153,749 + BACOVA_01642 0.79 +1.2 153,750 - BACOVA_01642 0.79 -0.8 153,772 - BACOVA_01642 0.81 -0.8 153,772 - BACOVA_01642 0.81 -0.2 153,773 + BACOVA_01642 0.81 -1.4 153,773 + BACOVA_01642 0.81 -0.9 153,774 - BACOVA_01642 0.81 -0.5 153,781 - BACOVA_01642 0.81 -2.9 153,804 - BACOVA_01642 0.83 +1.0 153,863 + BACOVA_01642 0.89 +0.2 153,876 + BACOVA_01642 0.90 -0.3 153,877 - BACOVA_01642 0.90 -1.7 153,883 - +0.1 153,884 + +1.3 153,885 - -1.2 153,887 - -0.9 153,925 + +0.9 153,925 + -1.4 153,993 - +0.7 154,012 + +0.8 154,013 - -4.0 154,066 - +1.5 154,182 + BACOVA_01643 0.14 -0.7 154,182 + BACOVA_01643 0.14 +2.5 154,182 + BACOVA_01643 0.14 +2.4 154,183 - BACOVA_01643 0.14 +3.2 154,183 - BACOVA_01643 0.14 +3.9 154,183 - BACOVA_01643 0.14 +1.1 154,184 + BACOVA_01643 0.14 +0.8 154,185 - BACOVA_01643 0.14 +2.9 154,284 - BACOVA_01643 0.33 -0.4 154,311 + BACOVA_01643 0.38 +3.6 154,311 + BACOVA_01643 0.38 +3.6 154,337 + BACOVA_01643 0.43 +3.3 154,337 + BACOVA_01643 0.43 +2.5 154,352 + BACOVA_01643 0.46 +1.9 154,403 + BACOVA_01643 0.55 +0.8 154,433 - BACOVA_01643 0.61 -0.2 154,433 - BACOVA_01643 0.61 +1.7 154,437 - BACOVA_01643 0.62 +1.8 154,480 - BACOVA_01643 0.70 +2.9 154,480 - BACOVA_01643 0.70 +2.4 154,481 + BACOVA_01643 0.70 +2.8 154,482 - BACOVA_01643 0.70 +3.1 154,579 + BACOVA_01643 0.88 +0.6 154,580 - BACOVA_01643 0.89 +0.9 154,589 + +2.6 154,604 + +3.6 154,624 + +1.8 154,624 + +1.6 154,643 + +1.1 154,644 - +0.4 154,674 - -1.5 154,702 + +0.8 154,702 + +1.9 154,802 + BACOVA_01644 0.28 -0.8 154,802 + BACOVA_01644 0.28 +0.6 154,802 + BACOVA_01644 0.28 -2.3 154,802 + BACOVA_01644 0.28 +0.6 154,803 - BACOVA_01644 0.28 -0.4 154,803 - BACOVA_01644 0.28 +0.7 154,803 - BACOVA_01644 0.28 +0.2 154,803 - BACOVA_01644 0.28 -0.7 154,828 + BACOVA_01644 0.35 +1.2 154,829 - BACOVA_01644 0.35 +1.1 154,833 + BACOVA_01644 0.36 +1.4 154,834 - BACOVA_01644 0.36 +1.5 154,868 + BACOVA_01644 0.45 -0.1 154,868 + BACOVA_01644 0.45 +0.8 154,868 + BACOVA_01644 0.45 +0.4 154,868 + BACOVA_01644 0.45 +1.3 154,957 + BACOVA_01644 0.67 +0.8 154,957 + BACOVA_01644 0.67 +0.8 154,970 + BACOVA_01644 0.71 +0.6 155,081 - -1.4 155,082 + +0.9 155,082 + -0.2 155,083 - +0.1 155,100 + +0.5
Or see this region's nucleotide sequence