Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00871

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00868 and BACOVA_00870 are separated by 60 nucleotidesBACOVA_00870 and BACOVA_00871 are separated by 53 nucleotidesBACOVA_00871 and BACOVA_00872 overlap by 4 nucleotidesBACOVA_00872 and BACOVA_00873 are separated by 64 nucleotides BACOVA_00868: BACOVA_00868 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 124,418 to 126,832 _00868 BACOVA_00870: BACOVA_00870 - hypothetical protein, at 126,893 to 127,000 _00870 BACOVA_00871: BACOVA_00871 - putative 8-amino-7-oxononanoate synthase, at 127,054 to 128,208 _00871 BACOVA_00872: BACOVA_00872 - hypothetical protein, at 128,205 to 128,867 _00872 BACOVA_00873: BACOVA_00873 - biotin biosynthesis protein BioC, at 128,932 to 129,798 _00873 Position (kb) 127 128 129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 126.127 kb on + strand, within BACOVA_00868at 126.128 kb on - strand, within BACOVA_00868at 126.129 kb on + strand, within BACOVA_00868at 126.129 kb on + strand, within BACOVA_00868at 126.130 kb on - strand, within BACOVA_00868at 126.132 kb on + strand, within BACOVA_00868at 126.133 kb on - strand, within BACOVA_00868at 126.133 kb on - strand, within BACOVA_00868at 126.133 kb on - strand, within BACOVA_00868at 126.139 kb on - strand, within BACOVA_00868at 126.168 kb on - strand, within BACOVA_00868at 126.224 kb on + strand, within BACOVA_00868at 126.298 kb on - strand, within BACOVA_00868at 126.298 kb on - strand, within BACOVA_00868at 126.298 kb on - strand, within BACOVA_00868at 126.298 kb on - strand, within BACOVA_00868at 126.322 kb on + strand, within BACOVA_00868at 126.352 kb on - strand, within BACOVA_00868at 126.363 kb on + strand, within BACOVA_00868at 126.363 kb on + strand, within BACOVA_00868at 126.364 kb on - strand, within BACOVA_00868at 126.364 kb on - strand, within BACOVA_00868at 126.395 kb on + strand, within BACOVA_00868at 126.396 kb on - strand, within BACOVA_00868at 126.396 kb on - strand, within BACOVA_00868at 126.397 kb on + strand, within BACOVA_00868at 126.398 kb on - strand, within BACOVA_00868at 126.415 kb on - strand, within BACOVA_00868at 126.440 kb on - strand, within BACOVA_00868at 126.440 kb on - strand, within BACOVA_00868at 126.470 kb on - strand, within BACOVA_00868at 126.481 kb on + strand, within BACOVA_00868at 126.482 kb on - strand, within BACOVA_00868at 126.488 kb on - strand, within BACOVA_00868at 126.633 kb on + strandat 126.682 kb on + strandat 126.683 kb on - strandat 126.683 kb on - strandat 126.691 kb on + strandat 126.748 kb on - strandat 126.748 kb on - strandat 126.749 kb on + strandat 126.786 kb on + strandat 126.811 kb on + strandat 126.812 kb on - strandat 126.812 kb on - strandat 126.847 kb on - strandat 126.849 kb on + strandat 126.990 kb on + strandat 127.022 kb on + strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.033 kb on + strandat 127.034 kb on - strandat 127.037 kb on - strandat 127.068 kb on + strandat 127.069 kb on - strandat 127.108 kb on + strandat 127.186 kb on - strand, within BACOVA_00871at 127.192 kb on + strand, within BACOVA_00871at 127.193 kb on - strand, within BACOVA_00871at 127.267 kb on - strand, within BACOVA_00871at 127.310 kb on - strand, within BACOVA_00871at 127.310 kb on - strand, within BACOVA_00871at 127.331 kb on + strand, within BACOVA_00871at 127.362 kb on + strand, within BACOVA_00871at 127.362 kb on + strand, within BACOVA_00871at 127.363 kb on - strand, within BACOVA_00871at 127.363 kb on - strand, within BACOVA_00871at 127.364 kb on + strand, within BACOVA_00871at 127.365 kb on - strand, within BACOVA_00871at 127.378 kb on + strand, within BACOVA_00871at 127.390 kb on - strand, within BACOVA_00871at 127.397 kb on + strand, within BACOVA_00871at 127.398 kb on - strand, within BACOVA_00871at 127.398 kb on - strand, within BACOVA_00871at 127.428 kb on + strand, within BACOVA_00871at 127.495 kb on - strand, within BACOVA_00871at 127.516 kb on - strand, within BACOVA_00871at 127.559 kb on - strand, within BACOVA_00871at 127.573 kb on - strand, within BACOVA_00871at 127.587 kb on + strand, within BACOVA_00871at 127.649 kb on - strand, within BACOVA_00871at 127.649 kb on - strand, within BACOVA_00871at 127.670 kb on + strand, within BACOVA_00871at 127.670 kb on + strand, within BACOVA_00871at 127.713 kb on - strand, within BACOVA_00871at 127.713 kb on - strand, within BACOVA_00871at 127.737 kb on + strand, within BACOVA_00871at 127.749 kb on - strand, within BACOVA_00871at 127.799 kb on - strand, within BACOVA_00871at 127.799 kb on - strand, within BACOVA_00871at 127.800 kb on + strand, within BACOVA_00871at 127.801 kb on - strand, within BACOVA_00871at 127.833 kb on + strand, within BACOVA_00871at 127.833 kb on + strand, within BACOVA_00871at 127.833 kb on + strand, within BACOVA_00871at 127.834 kb on - strand, within BACOVA_00871at 127.836 kb on + strand, within BACOVA_00871at 127.839 kb on + strand, within BACOVA_00871at 127.839 kb on + strand, within BACOVA_00871at 127.907 kb on + strand, within BACOVA_00871at 127.932 kb on + strand, within BACOVA_00871at 127.932 kb on + strand, within BACOVA_00871at 127.949 kb on + strand, within BACOVA_00871at 127.973 kb on + strand, within BACOVA_00871at 127.973 kb on + strand, within BACOVA_00871at 127.974 kb on - strand, within BACOVA_00871at 127.994 kb on - strand, within BACOVA_00871at 127.995 kb on + strand, within BACOVA_00871at 127.996 kb on - strand, within BACOVA_00871at 127.996 kb on - strand, within BACOVA_00871at 127.996 kb on - strand, within BACOVA_00871at 128.017 kb on - strand, within BACOVA_00871at 128.025 kb on + strand, within BACOVA_00871at 128.025 kb on + strand, within BACOVA_00871at 128.026 kb on - strand, within BACOVA_00871at 128.031 kb on + strand, within BACOVA_00871at 128.032 kb on - strand, within BACOVA_00871at 128.034 kb on - strand, within BACOVA_00871at 128.049 kb on + strand, within BACOVA_00871at 128.054 kb on + strand, within BACOVA_00871at 128.054 kb on + strand, within BACOVA_00871at 128.089 kb on + strand, within BACOVA_00871at 128.225 kb on - strandat 128.230 kb on - strandat 128.245 kb on + strandat 128.246 kb on - strandat 128.366 kb on - strand, within BACOVA_00872at 128.374 kb on - strand, within BACOVA_00872at 128.391 kb on - strand, within BACOVA_00872at 128.465 kb on + strand, within BACOVA_00872at 128.465 kb on + strand, within BACOVA_00872at 128.606 kb on + strand, within BACOVA_00872at 128.624 kb on - strand, within BACOVA_00872at 128.671 kb on + strand, within BACOVA_00872at 128.671 kb on + strand, within BACOVA_00872at 128.671 kb on + strand, within BACOVA_00872at 128.682 kb on + strand, within BACOVA_00872at 128.683 kb on - strand, within BACOVA_00872at 128.683 kb on - strand, within BACOVA_00872at 128.686 kb on + strand, within BACOVA_00872at 128.766 kb on + strand, within BACOVA_00872at 128.767 kb on - strand, within BACOVA_00872at 128.820 kb on + strandat 128.821 kb on - strandat 128.882 kb on + strandat 128.905 kb on + strandat 128.914 kb on - strandat 128.916 kb on + strandat 128.937 kb on + strandat 128.945 kb on + strandat 128.976 kb on + strandat 128.976 kb on + strandat 128.976 kb on + strandat 128.976 kb on + strandat 128.977 kb on - strandat 128.977 kb on - strandat 128.977 kb on - strandat 128.980 kb on + strandat 129.048 kb on - strand, within BACOVA_00873at 129.141 kb on - strand, within BACOVA_00873at 129.144 kb on + strand, within BACOVA_00873at 129.145 kb on - strand, within BACOVA_00873at 129.145 kb on - strand, within BACOVA_00873at 129.145 kb on - strand, within BACOVA_00873at 129.185 kb on + strand, within BACOVA_00873

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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126,127 + BACOVA_00868 0.71 -1.7
126,128 - BACOVA_00868 0.71 -3.1
126,129 + BACOVA_00868 0.71 -0.3
126,129 + BACOVA_00868 0.71 +0.1
126,130 - BACOVA_00868 0.71 -0.9
126,132 + BACOVA_00868 0.71 -3.4
126,133 - BACOVA_00868 0.71 -2.3
126,133 - BACOVA_00868 0.71 -2.0
126,133 - BACOVA_00868 0.71 -2.5
126,139 - BACOVA_00868 0.71 -1.9
126,168 - BACOVA_00868 0.72 -4.4
126,224 + BACOVA_00868 0.75 -2.1
126,298 - BACOVA_00868 0.78 -2.7
126,298 - BACOVA_00868 0.78 -3.8
126,298 - BACOVA_00868 0.78 -2.1
126,298 - BACOVA_00868 0.78 -0.5
126,322 + BACOVA_00868 0.79 -2.3
126,352 - BACOVA_00868 0.80 -1.8
126,363 + BACOVA_00868 0.81 -1.3
126,363 + BACOVA_00868 0.81 -0.6
126,364 - BACOVA_00868 0.81 -1.9
126,364 - BACOVA_00868 0.81 -1.3
126,395 + BACOVA_00868 0.82 -0.5
126,396 - BACOVA_00868 0.82 -2.9
126,396 - BACOVA_00868 0.82 -0.7
126,397 + BACOVA_00868 0.82 -1.6
126,398 - BACOVA_00868 0.82 -3.7
126,415 - BACOVA_00868 0.83 -2.1
126,440 - BACOVA_00868 0.84 -1.4
126,440 - BACOVA_00868 0.84 -0.6
126,470 - BACOVA_00868 0.85 -1.2
126,481 + BACOVA_00868 0.85 -2.5
126,482 - BACOVA_00868 0.85 -2.5
126,488 - BACOVA_00868 0.86 -3.5
126,633 + -1.2
126,682 + -2.8
126,683 - -1.1
126,683 - -2.0
126,691 + -3.1
126,748 - -0.2
126,748 - -3.2
126,749 + -1.3
126,786 + -1.4
126,811 + -1.2
126,812 - -3.3
126,812 - -1.1
126,847 - -0.9
126,849 + -0.2
126,990 + -0.7
127,022 + +0.7
127,023 - -0.5
127,023 - -0.7
127,033 + -0.3
127,034 - -3.9
127,037 - -2.0
127,068 + -0.9
127,069 - -2.7
127,108 + -1.1
127,186 - BACOVA_00871 0.11 -1.4
127,192 + BACOVA_00871 0.12 -0.7
127,193 - BACOVA_00871 0.12 -2.3
127,267 - BACOVA_00871 0.18 -1.7
127,310 - BACOVA_00871 0.22 -1.1
127,310 - BACOVA_00871 0.22 -1.1
127,331 + BACOVA_00871 0.24 -1.8
127,362 + BACOVA_00871 0.27 -1.9
127,362 + BACOVA_00871 0.27 -1.8
127,363 - BACOVA_00871 0.27 -2.9
127,363 - BACOVA_00871 0.27 -1.6
127,364 + BACOVA_00871 0.27 -3.9
127,365 - BACOVA_00871 0.27 -1.7
127,378 + BACOVA_00871 0.28 -1.1
127,390 - BACOVA_00871 0.29 -2.2
127,397 + BACOVA_00871 0.30 -0.7
127,398 - BACOVA_00871 0.30 -3.3
127,398 - BACOVA_00871 0.30 -1.8
127,428 + BACOVA_00871 0.32 -0.8
127,495 - BACOVA_00871 0.38 -0.7
127,516 - BACOVA_00871 0.40 +0.9
127,559 - BACOVA_00871 0.44 -3.2
127,573 - BACOVA_00871 0.45 -1.7
127,587 + BACOVA_00871 0.46 -2.0
127,649 - BACOVA_00871 0.52 -3.0
127,649 - BACOVA_00871 0.52 -0.7
127,670 + BACOVA_00871 0.53 -1.9
127,670 + BACOVA_00871 0.53 +0.2
127,713 - BACOVA_00871 0.57 -2.1
127,713 - BACOVA_00871 0.57 -2.2
127,737 + BACOVA_00871 0.59 -2.9
127,749 - BACOVA_00871 0.60 -2.9
127,799 - BACOVA_00871 0.65 -4.4
127,799 - BACOVA_00871 0.65 -1.5
127,800 + BACOVA_00871 0.65 -0.7
127,801 - BACOVA_00871 0.65 -2.5
127,833 + BACOVA_00871 0.67 -4.9
127,833 + BACOVA_00871 0.67 -2.3
127,833 + BACOVA_00871 0.67 -1.9
127,834 - BACOVA_00871 0.68 -2.1
127,836 + BACOVA_00871 0.68 -3.5
127,839 + BACOVA_00871 0.68 -2.5
127,839 + BACOVA_00871 0.68 -3.7
127,907 + BACOVA_00871 0.74 -0.5
127,932 + BACOVA_00871 0.76 -1.7
127,932 + BACOVA_00871 0.76 -2.7
127,949 + BACOVA_00871 0.77 -2.1
127,973 + BACOVA_00871 0.80 -3.5
127,973 + BACOVA_00871 0.80 -2.5
127,974 - BACOVA_00871 0.80 -1.8
127,994 - BACOVA_00871 0.81 -1.1
127,995 + BACOVA_00871 0.81 -2.6
127,996 - BACOVA_00871 0.82 -4.1
127,996 - BACOVA_00871 0.82 -2.9
127,996 - BACOVA_00871 0.82 -2.1
128,017 - BACOVA_00871 0.83 -0.9
128,025 + BACOVA_00871 0.84 +0.9
128,025 + BACOVA_00871 0.84 -0.3
128,026 - BACOVA_00871 0.84 -1.9
128,031 + BACOVA_00871 0.85 -1.3
128,032 - BACOVA_00871 0.85 -2.1
128,034 - BACOVA_00871 0.85 -3.1
128,049 + BACOVA_00871 0.86 -0.3
128,054 + BACOVA_00871 0.87 -3.1
128,054 + BACOVA_00871 0.87 -3.0
128,089 + BACOVA_00871 0.90 -2.8
128,225 - -1.1
128,230 - -2.9
128,245 + -2.7
128,246 - -4.1
128,366 - BACOVA_00872 0.24 -1.8
128,374 - BACOVA_00872 0.25 -3.3
128,391 - BACOVA_00872 0.28 -0.2
128,465 + BACOVA_00872 0.39 -2.6
128,465 + BACOVA_00872 0.39 -2.1
128,606 + BACOVA_00872 0.60 -1.3
128,624 - BACOVA_00872 0.63 -0.5
128,671 + BACOVA_00872 0.70 -3.1
128,671 + BACOVA_00872 0.70 -1.8
128,671 + BACOVA_00872 0.70 -2.6
128,682 + BACOVA_00872 0.72 -2.6
128,683 - BACOVA_00872 0.72 -4.5
128,683 - BACOVA_00872 0.72 -2.7
128,686 + BACOVA_00872 0.73 -2.6
128,766 + BACOVA_00872 0.85 -1.4
128,767 - BACOVA_00872 0.85 -0.5
128,820 + -3.0
128,821 - -3.7
128,882 + +0.1
128,905 + +1.1
128,914 - -1.9
128,916 + +0.1
128,937 + -3.3
128,945 + -2.7
128,976 + -2.2
128,976 + -2.4
128,976 + -1.9
128,976 + -1.1
128,977 - -2.4
128,977 - -1.6
128,977 - -1.5
128,980 + -2.1
129,048 - BACOVA_00873 0.13 -1.5
129,141 - BACOVA_00873 0.24 -2.0
129,144 + BACOVA_00873 0.24 -0.2
129,145 - BACOVA_00873 0.25 -1.2
129,145 - BACOVA_00873 0.25 -2.5
129,145 - BACOVA_00873 0.25 -3.9
129,185 + BACOVA_00873 0.29 -4.1

Or see this region's nucleotide sequence