Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00212

Experiment: b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00211 and BACOVA_00212 are separated by 211 nucleotidesBACOVA_00212 and BACOVA_00213 are separated by 31 nucleotides BACOVA_00211: BACOVA_00211 - glycine C-acetyltransferase, at 27,204 to 28,397 _00211 BACOVA_00212: BACOVA_00212 - hypothetical protein, at 28,609 to 29,016 _00212 BACOVA_00213: BACOVA_00213 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 29,048 to 31,312 _00213 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.814 kb on + strand, within BACOVA_00211at 27.847 kb on + strand, within BACOVA_00211at 27.848 kb on - strand, within BACOVA_00211at 27.869 kb on - strand, within BACOVA_00211at 27.869 kb on - strand, within BACOVA_00211at 27.869 kb on - strand, within BACOVA_00211at 27.879 kb on + strand, within BACOVA_00211at 27.879 kb on + strand, within BACOVA_00211at 27.879 kb on + strand, within BACOVA_00211at 27.879 kb on + strand, within BACOVA_00211at 27.880 kb on - strand, within BACOVA_00211at 27.881 kb on + strand, within BACOVA_00211at 27.902 kb on + strand, within BACOVA_00211at 27.906 kb on + strand, within BACOVA_00211at 27.906 kb on + strand, within BACOVA_00211at 27.907 kb on - strand, within BACOVA_00211at 27.954 kb on - strand, within BACOVA_00211at 27.954 kb on - strand, within BACOVA_00211at 28.006 kb on - strand, within BACOVA_00211at 28.111 kb on + strand, within BACOVA_00211at 28.111 kb on + strand, within BACOVA_00211at 28.116 kb on + strand, within BACOVA_00211at 28.117 kb on - strand, within BACOVA_00211at 28.117 kb on - strand, within BACOVA_00211at 28.117 kb on - strand, within BACOVA_00211at 28.184 kb on + strand, within BACOVA_00211at 28.185 kb on - strand, within BACOVA_00211at 28.205 kb on - strand, within BACOVA_00211at 28.245 kb on + strand, within BACOVA_00211at 28.246 kb on - strand, within BACOVA_00211at 28.260 kb on + strand, within BACOVA_00211at 28.261 kb on - strand, within BACOVA_00211at 28.271 kb on - strand, within BACOVA_00211at 28.343 kb on + strandat 28.355 kb on + strandat 28.364 kb on - strandat 28.367 kb on + strandat 28.367 kb on + strandat 28.368 kb on - strandat 28.381 kb on + strandat 28.382 kb on - strandat 28.396 kb on - strandat 28.428 kb on + strandat 28.434 kb on - strandat 28.444 kb on + strandat 28.478 kb on - strandat 28.482 kb on + strandat 28.505 kb on + strandat 28.524 kb on - strandat 28.541 kb on + strandat 28.542 kb on - strandat 28.542 kb on - strandat 28.564 kb on + strandat 28.566 kb on + strandat 28.603 kb on + strandat 28.667 kb on + strand, within BACOVA_00212at 28.675 kb on + strand, within BACOVA_00212at 28.676 kb on - strand, within BACOVA_00212at 28.676 kb on - strand, within BACOVA_00212at 28.696 kb on + strand, within BACOVA_00212at 28.697 kb on - strand, within BACOVA_00212at 28.775 kb on + strand, within BACOVA_00212at 28.775 kb on + strand, within BACOVA_00212at 28.775 kb on + strand, within BACOVA_00212at 28.776 kb on - strand, within BACOVA_00212at 28.800 kb on + strand, within BACOVA_00212at 28.800 kb on + strand, within BACOVA_00212at 28.841 kb on + strand, within BACOVA_00212at 28.848 kb on + strand, within BACOVA_00212at 28.858 kb on - strand, within BACOVA_00212at 28.861 kb on + strand, within BACOVA_00212at 28.862 kb on - strand, within BACOVA_00212at 28.888 kb on + strand, within BACOVA_00212at 28.888 kb on + strand, within BACOVA_00212at 28.919 kb on + strand, within BACOVA_00212at 28.949 kb on + strand, within BACOVA_00212at 28.950 kb on - strand, within BACOVA_00212at 29.036 kb on + strandat 29.037 kb on - strandat 29.039 kb on + strandat 29.040 kb on - strandat 29.047 kb on - strandat 29.099 kb on + strandat 29.100 kb on - strandat 29.144 kb on + strandat 29.156 kb on - strandat 29.199 kb on + strandat 29.200 kb on - strandat 29.200 kb on - strandat 29.251 kb on + strandat 29.259 kb on - strandat 29.259 kb on - strandat 29.293 kb on - strand, within BACOVA_00213at 29.296 kb on + strand, within BACOVA_00213at 29.297 kb on - strand, within BACOVA_00213at 29.299 kb on - strand, within BACOVA_00213at 29.304 kb on - strand, within BACOVA_00213at 29.311 kb on + strand, within BACOVA_00213at 29.358 kb on - strand, within BACOVA_00213at 29.366 kb on + strand, within BACOVA_00213at 29.403 kb on - strand, within BACOVA_00213at 29.403 kb on - strand, within BACOVA_00213at 29.403 kb on - strand, within BACOVA_00213at 29.403 kb on - strand, within BACOVA_00213at 29.404 kb on + strand, within BACOVA_00213at 29.404 kb on + strand, within BACOVA_00213at 29.408 kb on - strand, within BACOVA_00213at 29.463 kb on + strand, within BACOVA_00213at 29.464 kb on - strand, within BACOVA_00213at 29.464 kb on - strand, within BACOVA_00213at 29.515 kb on + strand, within BACOVA_00213at 29.515 kb on + strand, within BACOVA_00213at 29.516 kb on - strand, within BACOVA_00213at 29.516 kb on - strand, within BACOVA_00213at 29.516 kb on - strand, within BACOVA_00213at 29.516 kb on - strand, within BACOVA_00213at 29.516 kb on - strand, within BACOVA_00213at 29.517 kb on + strand, within BACOVA_00213at 29.517 kb on + strand, within BACOVA_00213at 29.518 kb on - strand, within BACOVA_00213at 29.518 kb on - strand, within BACOVA_00213at 29.587 kb on + strand, within BACOVA_00213at 29.588 kb on - strand, within BACOVA_00213at 29.590 kb on + strand, within BACOVA_00213at 29.590 kb on + strand, within BACOVA_00213at 29.601 kb on + strand, within BACOVA_00213at 29.648 kb on - strand, within BACOVA_00213at 29.681 kb on - strand, within BACOVA_00213at 29.681 kb on - strand, within BACOVA_00213at 29.681 kb on - strand, within BACOVA_00213at 29.698 kb on + strand, within BACOVA_00213at 29.698 kb on + strand, within BACOVA_00213at 29.699 kb on - strand, within BACOVA_00213at 29.786 kb on + strand, within BACOVA_00213at 29.787 kb on - strand, within BACOVA_00213at 29.812 kb on + strand, within BACOVA_00213at 29.812 kb on + strand, within BACOVA_00213at 29.814 kb on + strand, within BACOVA_00213at 29.815 kb on - strand, within BACOVA_00213at 29.837 kb on - strand, within BACOVA_00213at 29.839 kb on + strand, within BACOVA_00213at 29.843 kb on - strand, within BACOVA_00213at 29.866 kb on - strand, within BACOVA_00213at 29.866 kb on - strand, within BACOVA_00213at 29.866 kb on - strand, within BACOVA_00213at 30.008 kb on + strand, within BACOVA_00213

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Mannan borohydrate reduced carob seed 2.5 mg/mL (C)
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27,814 + BACOVA_00211 0.51 -0.5
27,847 + BACOVA_00211 0.54 +0.3
27,848 - BACOVA_00211 0.54 -2.5
27,869 - BACOVA_00211 0.56 -1.3
27,869 - BACOVA_00211 0.56 +0.9
27,869 - BACOVA_00211 0.56 -0.6
27,879 + BACOVA_00211 0.57 -1.5
27,879 + BACOVA_00211 0.57 -0.8
27,879 + BACOVA_00211 0.57 +1.4
27,879 + BACOVA_00211 0.57 +2.1
27,880 - BACOVA_00211 0.57 -0.9
27,881 + BACOVA_00211 0.57 +0.6
27,902 + BACOVA_00211 0.58 -2.5
27,906 + BACOVA_00211 0.59 -0.6
27,906 + BACOVA_00211 0.59 -1.2
27,907 - BACOVA_00211 0.59 +1.3
27,954 - BACOVA_00211 0.63 +0.3
27,954 - BACOVA_00211 0.63 +1.7
28,006 - BACOVA_00211 0.67 -0.8
28,111 + BACOVA_00211 0.76 -2.1
28,111 + BACOVA_00211 0.76 -2.1
28,116 + BACOVA_00211 0.76 -0.7
28,117 - BACOVA_00211 0.76 -2.5
28,117 - BACOVA_00211 0.76 +0.9
28,117 - BACOVA_00211 0.76 -2.1
28,184 + BACOVA_00211 0.82 +0.2
28,185 - BACOVA_00211 0.82 +0.4
28,205 - BACOVA_00211 0.84 -0.6
28,245 + BACOVA_00211 0.87 -0.6
28,246 - BACOVA_00211 0.87 -1.5
28,260 + BACOVA_00211 0.88 -1.3
28,261 - BACOVA_00211 0.89 +0.3
28,271 - BACOVA_00211 0.89 +1.3
28,343 + -2.2
28,355 + +1.2
28,364 - -1.1
28,367 + -0.5
28,367 + -0.1
28,368 - -1.3
28,381 + +1.1
28,382 - -1.3
28,396 - -0.1
28,428 + -0.1
28,434 - -0.9
28,444 + -0.9
28,478 - -0.0
28,482 + -0.5
28,505 + -0.9
28,524 - +1.7
28,541 + +0.8
28,542 - -1.1
28,542 - -0.2
28,564 + +1.3
28,566 + -0.5
28,603 + +1.0
28,667 + BACOVA_00212 0.14 -1.4
28,675 + BACOVA_00212 0.16 -0.3
28,676 - BACOVA_00212 0.16 -0.2
28,676 - BACOVA_00212 0.16 +1.9
28,696 + BACOVA_00212 0.21 +0.3
28,697 - BACOVA_00212 0.22 +2.0
28,775 + BACOVA_00212 0.41 -1.4
28,775 + BACOVA_00212 0.41 -0.9
28,775 + BACOVA_00212 0.41 +1.3
28,776 - BACOVA_00212 0.41 +0.6
28,800 + BACOVA_00212 0.47 -1.4
28,800 + BACOVA_00212 0.47 -2.9
28,841 + BACOVA_00212 0.57 -2.1
28,848 + BACOVA_00212 0.59 +0.2
28,858 - BACOVA_00212 0.61 +0.6
28,861 + BACOVA_00212 0.62 -0.7
28,862 - BACOVA_00212 0.62 +0.4
28,888 + BACOVA_00212 0.68 +0.7
28,888 + BACOVA_00212 0.68 -0.5
28,919 + BACOVA_00212 0.76 +0.4
28,949 + BACOVA_00212 0.83 +0.1
28,950 - BACOVA_00212 0.84 -0.6
29,036 + -1.1
29,037 - +1.1
29,039 + +0.5
29,040 - -0.2
29,047 - -1.2
29,099 + -1.3
29,100 - +0.5
29,144 + +1.2
29,156 - +0.0
29,199 + -1.2
29,200 - +0.1
29,200 - +1.2
29,251 + -0.1
29,259 - -2.1
29,259 - -0.1
29,293 - BACOVA_00213 0.11 -0.1
29,296 + BACOVA_00213 0.11 +0.5
29,297 - BACOVA_00213 0.11 +1.1
29,299 - BACOVA_00213 0.11 +0.4
29,304 - BACOVA_00213 0.11 +3.2
29,311 + BACOVA_00213 0.12 +0.9
29,358 - BACOVA_00213 0.14 +1.3
29,366 + BACOVA_00213 0.14 -2.1
29,403 - BACOVA_00213 0.16 -2.4
29,403 - BACOVA_00213 0.16 +0.6
29,403 - BACOVA_00213 0.16 -1.4
29,403 - BACOVA_00213 0.16 +0.5
29,404 + BACOVA_00213 0.16 +2.3
29,404 + BACOVA_00213 0.16 -1.0
29,408 - BACOVA_00213 0.16 -0.8
29,463 + BACOVA_00213 0.18 -0.1
29,464 - BACOVA_00213 0.18 -3.1
29,464 - BACOVA_00213 0.18 +0.6
29,515 + BACOVA_00213 0.21 +0.3
29,515 + BACOVA_00213 0.21 -1.6
29,516 - BACOVA_00213 0.21 +1.2
29,516 - BACOVA_00213 0.21 +0.1
29,516 - BACOVA_00213 0.21 -2.0
29,516 - BACOVA_00213 0.21 -0.8
29,516 - BACOVA_00213 0.21 +2.4
29,517 + BACOVA_00213 0.21 -0.3
29,517 + BACOVA_00213 0.21 -0.1
29,518 - BACOVA_00213 0.21 -0.7
29,518 - BACOVA_00213 0.21 -0.7
29,587 + BACOVA_00213 0.24 +0.6
29,588 - BACOVA_00213 0.24 -2.0
29,590 + BACOVA_00213 0.24 -0.9
29,590 + BACOVA_00213 0.24 -1.0
29,601 + BACOVA_00213 0.24 -0.5
29,648 - BACOVA_00213 0.26 +0.6
29,681 - BACOVA_00213 0.28 +0.0
29,681 - BACOVA_00213 0.28 -0.2
29,681 - BACOVA_00213 0.28 -2.1
29,698 + BACOVA_00213 0.29 -2.0
29,698 + BACOVA_00213 0.29 +0.5
29,699 - BACOVA_00213 0.29 +0.4
29,786 + BACOVA_00213 0.33 +2.0
29,787 - BACOVA_00213 0.33 +0.2
29,812 + BACOVA_00213 0.34 -0.7
29,812 + BACOVA_00213 0.34 -0.5
29,814 + BACOVA_00213 0.34 -1.8
29,815 - BACOVA_00213 0.34 -0.1
29,837 - BACOVA_00213 0.35 +0.4
29,839 + BACOVA_00213 0.35 -3.2
29,843 - BACOVA_00213 0.35 -1.3
29,866 - BACOVA_00213 0.36 -3.4
29,866 - BACOVA_00213 0.36 +0.1
29,866 - BACOVA_00213 0.36 +0.9
30,008 + BACOVA_00213 0.42 -0.0

Or see this region's nucleotide sequence