Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02039

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02037 and MPMX26_02038 are separated by 2 nucleotidesMPMX26_02038 and MPMX26_02039 are separated by 101 nucleotidesMPMX26_02039 and MPMX26_02040 are separated by 210 nucleotides MPMX26_02037: MPMX26_02037 - hypothetical protein, at 2,103,747 to 2,104,691 _02037 MPMX26_02038: MPMX26_02038 - tRNA (adenine(37)-N6)-methyltransferase, at 2,104,694 to 2,105,395 _02038 MPMX26_02039: MPMX26_02039 - Ferredoxin--NADP reductase, at 2,105,497 to 2,106,276 _02039 MPMX26_02040: MPMX26_02040 - 23S rRNA 5-hydroxycytidine synthase, at 2,106,487 to 2,107,881 _02040 Position (kb) 2105 2106 2107Strain fitness (log2 ratio) -2 -1 0 1at 2104.903 kb on - strand, within MPMX26_02038at 2104.903 kb on - strand, within MPMX26_02038at 2104.903 kb on - strand, within MPMX26_02038at 2104.981 kb on - strand, within MPMX26_02038at 2104.990 kb on - strand, within MPMX26_02038at 2104.990 kb on - strand, within MPMX26_02038at 2104.990 kb on - strand, within MPMX26_02038at 2105.045 kb on - strand, within MPMX26_02038at 2105.149 kb on - strand, within MPMX26_02038at 2105.149 kb on - strand, within MPMX26_02038at 2105.245 kb on - strand, within MPMX26_02038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
2,104,903 - MPMX26_02038 0.30 +0.2
2,104,903 - MPMX26_02038 0.30 +0.2
2,104,903 - MPMX26_02038 0.30 +0.4
2,104,981 - MPMX26_02038 0.41 +0.8
2,104,990 - MPMX26_02038 0.42 -0.2
2,104,990 - MPMX26_02038 0.42 +0.2
2,104,990 - MPMX26_02038 0.42 +0.3
2,105,045 - MPMX26_02038 0.50 -1.9
2,105,149 - MPMX26_02038 0.65 -0.0
2,105,149 - MPMX26_02038 0.65 -1.5
2,105,245 - MPMX26_02038 0.78 -1.8

Or see this region's nucleotide sequence