Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01467

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01466 and MPMX26_01467 are separated by 136 nucleotidesMPMX26_01467 and MPMX26_01468 are separated by 32 nucleotides MPMX26_01466: MPMX26_01466 - Bifunctional protein PutA, at 1,516,543 to 1,520,295 _01466 MPMX26_01467: MPMX26_01467 - Leucine-responsive regulatory protein, at 1,520,432 to 1,520,920 _01467 MPMX26_01468: MPMX26_01468 - Sodium/proline symporter, at 1,520,953 to 1,522,443 _01468 Position (kb) 1520 1521Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1519.461 kb on - strand, within MPMX26_01466at 1519.526 kb on - strand, within MPMX26_01466at 1519.549 kb on - strand, within MPMX26_01466at 1519.583 kb on - strand, within MPMX26_01466at 1519.604 kb on - strand, within MPMX26_01466at 1519.609 kb on - strand, within MPMX26_01466at 1519.616 kb on - strand, within MPMX26_01466at 1519.616 kb on - strand, within MPMX26_01466at 1519.616 kb on - strand, within MPMX26_01466at 1519.654 kb on - strand, within MPMX26_01466at 1519.708 kb on - strand, within MPMX26_01466at 1520.467 kb on + strandat 1520.521 kb on + strand, within MPMX26_01467at 1520.521 kb on + strand, within MPMX26_01467at 1520.531 kb on + strand, within MPMX26_01467at 1520.563 kb on + strand, within MPMX26_01467at 1520.564 kb on + strand, within MPMX26_01467at 1520.669 kb on + strand, within MPMX26_01467at 1520.669 kb on + strand, within MPMX26_01467at 1520.857 kb on + strand, within MPMX26_01467at 1521.018 kb on - strandat 1521.018 kb on - strandat 1521.037 kb on - strandat 1521.037 kb on - strandat 1521.037 kb on - strandat 1521.037 kb on - strandat 1521.142 kb on - strand, within MPMX26_01468at 1521.142 kb on - strand, within MPMX26_01468at 1521.163 kb on - strand, within MPMX26_01468at 1521.168 kb on - strand, within MPMX26_01468at 1521.195 kb on - strand, within MPMX26_01468at 1521.213 kb on - strand, within MPMX26_01468at 1521.225 kb on - strand, within MPMX26_01468at 1521.225 kb on - strand, within MPMX26_01468at 1521.225 kb on - strand, within MPMX26_01468at 1521.225 kb on - strand, within MPMX26_01468at 1521.255 kb on - strand, within MPMX26_01468at 1521.262 kb on - strand, within MPMX26_01468at 1521.331 kb on - strand, within MPMX26_01468at 1521.331 kb on - strand, within MPMX26_01468at 1521.331 kb on - strand, within MPMX26_01468at 1521.331 kb on - strand, within MPMX26_01468at 1521.331 kb on - strand, within MPMX26_01468at 1521.336 kb on - strand, within MPMX26_01468at 1521.390 kb on - strand, within MPMX26_01468at 1521.432 kb on - strand, within MPMX26_01468at 1521.432 kb on - strand, within MPMX26_01468at 1521.432 kb on - strand, within MPMX26_01468at 1521.435 kb on - strand, within MPMX26_01468at 1521.435 kb on - strand, within MPMX26_01468at 1521.435 kb on - strand, within MPMX26_01468at 1521.435 kb on - strand, within MPMX26_01468at 1521.462 kb on - strand, within MPMX26_01468at 1521.555 kb on - strand, within MPMX26_01468at 1521.562 kb on - strand, within MPMX26_01468at 1521.618 kb on - strand, within MPMX26_01468at 1521.618 kb on - strand, within MPMX26_01468at 1521.691 kb on - strand, within MPMX26_01468at 1521.706 kb on - strand, within MPMX26_01468at 1521.718 kb on - strand, within MPMX26_01468at 1521.723 kb on - strand, within MPMX26_01468at 1521.723 kb on - strand, within MPMX26_01468at 1521.780 kb on - strand, within MPMX26_01468at 1521.790 kb on - strand, within MPMX26_01468at 1521.790 kb on - strand, within MPMX26_01468at 1521.790 kb on - strand, within MPMX26_01468at 1521.802 kb on - strand, within MPMX26_01468at 1521.802 kb on - strand, within MPMX26_01468

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,519,461 - MPMX26_01466 0.78 -2.8
1,519,526 - MPMX26_01466 0.79 -0.6
1,519,549 - MPMX26_01466 0.80 -1.9
1,519,583 - MPMX26_01466 0.81 -2.3
1,519,604 - MPMX26_01466 0.82 -3.3
1,519,609 - MPMX26_01466 0.82 -2.3
1,519,616 - MPMX26_01466 0.82 -1.6
1,519,616 - MPMX26_01466 0.82 -2.8
1,519,616 - MPMX26_01466 0.82 -1.7
1,519,654 - MPMX26_01466 0.83 -2.5
1,519,708 - MPMX26_01466 0.84 -2.1
1,520,467 + -4.8
1,520,521 + MPMX26_01467 0.18 -2.3
1,520,521 + MPMX26_01467 0.18 -2.9
1,520,531 + MPMX26_01467 0.20 -2.5
1,520,563 + MPMX26_01467 0.27 -4.5
1,520,564 + MPMX26_01467 0.27 -1.7
1,520,669 + MPMX26_01467 0.48 -0.0
1,520,669 + MPMX26_01467 0.48 -2.0
1,520,857 + MPMX26_01467 0.87 -3.0
1,521,018 - -2.3
1,521,018 - -2.3
1,521,037 - -4.5
1,521,037 - -4.1
1,521,037 - -2.7
1,521,037 - -3.7
1,521,142 - MPMX26_01468 0.13 -3.4
1,521,142 - MPMX26_01468 0.13 -5.2
1,521,163 - MPMX26_01468 0.14 -2.3
1,521,168 - MPMX26_01468 0.14 -2.5
1,521,195 - MPMX26_01468 0.16 -2.5
1,521,213 - MPMX26_01468 0.17 -3.2
1,521,225 - MPMX26_01468 0.18 -3.1
1,521,225 - MPMX26_01468 0.18 +1.2
1,521,225 - MPMX26_01468 0.18 -3.1
1,521,225 - MPMX26_01468 0.18 -3.4
1,521,255 - MPMX26_01468 0.20 -2.7
1,521,262 - MPMX26_01468 0.21 -2.3
1,521,331 - MPMX26_01468 0.25 -4.1
1,521,331 - MPMX26_01468 0.25 -4.2
1,521,331 - MPMX26_01468 0.25 -2.5
1,521,331 - MPMX26_01468 0.25 -3.6
1,521,331 - MPMX26_01468 0.25 -2.7
1,521,336 - MPMX26_01468 0.26 -2.7
1,521,390 - MPMX26_01468 0.29 -0.8
1,521,432 - MPMX26_01468 0.32 -4.4
1,521,432 - MPMX26_01468 0.32 -2.9
1,521,432 - MPMX26_01468 0.32 -3.5
1,521,435 - MPMX26_01468 0.32 -3.3
1,521,435 - MPMX26_01468 0.32 -2.7
1,521,435 - MPMX26_01468 0.32 -3.8
1,521,435 - MPMX26_01468 0.32 -3.7
1,521,462 - MPMX26_01468 0.34 -4.4
1,521,555 - MPMX26_01468 0.40 -2.6
1,521,562 - MPMX26_01468 0.41 -2.5
1,521,618 - MPMX26_01468 0.45 -3.2
1,521,618 - MPMX26_01468 0.45 -1.5
1,521,691 - MPMX26_01468 0.49 -2.0
1,521,706 - MPMX26_01468 0.51 -2.8
1,521,718 - MPMX26_01468 0.51 -1.0
1,521,723 - MPMX26_01468 0.52 -4.4
1,521,723 - MPMX26_01468 0.52 -4.1
1,521,780 - MPMX26_01468 0.55 -3.3
1,521,790 - MPMX26_01468 0.56 -2.2
1,521,790 - MPMX26_01468 0.56 -2.5
1,521,790 - MPMX26_01468 0.56 -4.1
1,521,802 - MPMX26_01468 0.57 -2.0
1,521,802 - MPMX26_01468 0.57 -5.4

Or see this region's nucleotide sequence