Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF939

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF938 and GFF939 are separated by 69 nucleotidesGFF939 and GFF940 overlap by 7 nucleotidesGFF940 and GFF941 are separated by 47 nucleotides GFF938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 670,978 to 672,030 GFF938 GFF939 - hypothetical protein, at 672,100 to 673,329 GFF939 GFF940 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 673,323 to 674,183 GFF940 GFF941 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 674,231 to 675,331 GFF941 Position (kb) 672 673 674Strain fitness (log2 ratio) -2 -1 0 1 2at 671.115 kb on - strand, within GFF938at 671.120 kb on + strand, within GFF938at 671.504 kb on - strand, within GFF938at 671.504 kb on - strand, within GFF938at 671.504 kb on - strand, within GFF938at 671.504 kb on - strand, within GFF938at 671.705 kb on - strand, within GFF938at 672.111 kb on + strandat 672.112 kb on - strandat 672.112 kb on - strandat 672.223 kb on + strand, within GFF939at 672.491 kb on - strand, within GFF939at 672.541 kb on + strand, within GFF939at 672.541 kb on + strand, within GFF939at 672.676 kb on + strand, within GFF939at 672.676 kb on + strand, within GFF939at 672.677 kb on - strand, within GFF939at 672.677 kb on - strand, within GFF939at 672.904 kb on - strand, within GFF939at 672.904 kb on - strand, within GFF939at 672.997 kb on + strand, within GFF939at 673.320 kb on + strandat 673.320 kb on + strandat 673.321 kb on - strandat 673.402 kb on + strandat 673.422 kb on + strand, within GFF940at 673.422 kb on + strand, within GFF940at 673.422 kb on + strand, within GFF940at 673.422 kb on + strand, within GFF940at 673.423 kb on - strand, within GFF940at 673.423 kb on - strand, within GFF940at 673.511 kb on + strand, within GFF940at 673.511 kb on + strand, within GFF940at 673.512 kb on - strand, within GFF940at 673.512 kb on - strand, within GFF940at 673.512 kb on - strand, within GFF940at 673.512 kb on - strand, within GFF940at 673.512 kb on - strand, within GFF940at 673.761 kb on + strand, within GFF940at 673.762 kb on - strand, within GFF940at 674.017 kb on - strand, within GFF940at 674.022 kb on + strand, within GFF940at 674.023 kb on - strand, within GFF940at 674.023 kb on - strand, within GFF940at 674.100 kb on + strandat 674.146 kb on + strandat 674.155 kb on - strandat 674.155 kb on - strandat 674.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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671,115 - GFF938 0.13 +1.0
671,120 + GFF938 0.13 +0.4
671,504 - GFF938 0.50 -0.3
671,504 - GFF938 0.50 -0.1
671,504 - GFF938 0.50 -0.1
671,504 - GFF938 0.50 -1.4
671,705 - GFF938 0.69 -1.2
672,111 + -0.4
672,112 - +0.6
672,112 - +0.2
672,223 + GFF939 0.10 +1.3
672,491 - GFF939 0.32 +0.3
672,541 + GFF939 0.36 +0.5
672,541 + GFF939 0.36 +0.1
672,676 + GFF939 0.47 -0.5
672,676 + GFF939 0.47 +0.1
672,677 - GFF939 0.47 +0.2
672,677 - GFF939 0.47 -0.2
672,904 - GFF939 0.65 +1.9
672,904 - GFF939 0.65 +0.3
672,997 + GFF939 0.73 +0.1
673,320 + -1.9
673,320 + -0.6
673,321 - -1.4
673,402 + +0.5
673,422 + GFF940 0.11 +0.2
673,422 + GFF940 0.11 -0.2
673,422 + GFF940 0.11 +0.6
673,422 + GFF940 0.11 +0.2
673,423 - GFF940 0.12 +0.4
673,423 - GFF940 0.12 +1.0
673,511 + GFF940 0.22 -0.3
673,511 + GFF940 0.22 +0.6
673,512 - GFF940 0.22 +0.3
673,512 - GFF940 0.22 +0.3
673,512 - GFF940 0.22 -0.4
673,512 - GFF940 0.22 -0.3
673,512 - GFF940 0.22 +0.4
673,761 + GFF940 0.51 +0.5
673,762 - GFF940 0.51 +0.4
674,017 - GFF940 0.81 -0.5
674,022 + GFF940 0.81 +0.3
674,023 - GFF940 0.81 +0.3
674,023 - GFF940 0.81 -0.8
674,100 + -0.0
674,146 + +0.7
674,155 - -0.7
674,155 - +0.4
674,205 + +0.7

Or see this region's nucleotide sequence