Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF862 and GFF863 are separated by 840 nucleotides GFF863 and GFF864 are separated by 451 nucleotides
GFF862 - Possible monoamine oxidase, at 581,545 to 582,606
GFF862
GFF863 - Glutathione S-transferase (EC 2.5.1.18), at 583,447 to 584,067
GFF863
GFF864 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 584,519 to 584,737
GFF864
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2 at 582.672 kb on + strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.673 kb on - strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.704 kb on + strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.705 kb on - strand at 582.728 kb on + strand at 582.729 kb on - strand at 582.739 kb on - strand at 582.765 kb on - strand at 582.863 kb on + strand at 582.863 kb on + strand at 582.863 kb on + strand at 582.864 kb on - strand at 582.893 kb on + strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.894 kb on - strand at 582.908 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.960 kb on + strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.961 kb on - strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.987 kb on + strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.988 kb on - strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.989 kb on + strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.990 kb on - strand at 582.991 kb on - strand at 583.082 kb on + strand at 583.123 kb on + strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.124 kb on - strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.152 kb on + strand at 583.153 kb on + strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.153 kb on - strand at 583.225 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.231 kb on + strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.232 kb on - strand at 583.260 kb on + strand at 583.322 kb on + strand at 583.322 kb on + strand at 583.322 kb on + strand at 583.323 kb on - strand at 583.323 kb on - strand at 583.427 kb on + strand at 583.428 kb on - strand at 583.575 kb on + strand, within GFF863 at 583.628 kb on + strand, within GFF863 at 583.629 kb on - strand, within GFF863 at 583.629 kb on - strand, within GFF863 at 583.629 kb on - strand, within GFF863 at 583.629 kb on - strand, within GFF863 at 583.638 kb on + strand, within GFF863 at 583.717 kb on - strand, within GFF863 at 583.726 kb on + strand, within GFF863 at 583.727 kb on - strand, within GFF863 at 583.731 kb on - strand, within GFF863 at 583.731 kb on - strand, within GFF863 at 583.845 kb on + strand, within GFF863 at 583.845 kb on + strand, within GFF863 at 583.845 kb on + strand, within GFF863 at 583.846 kb on - strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.847 kb on + strand, within GFF863 at 583.848 kb on - strand, within GFF863 at 583.848 kb on - strand, within GFF863 at 583.848 kb on - strand, within GFF863 at 583.875 kb on + strand, within GFF863 at 583.875 kb on + strand, within GFF863 at 583.876 kb on - strand, within GFF863 at 583.911 kb on + strand, within GFF863 at 583.911 kb on + strand, within GFF863 at 583.911 kb on + strand, within GFF863 at 583.911 kb on + strand, within GFF863 at 583.912 kb on - strand, within GFF863 at 584.112 kb on + strand at 584.119 kb on - strand at 584.146 kb on - strand at 584.277 kb on + strand at 584.277 kb on + strand at 584.277 kb on + strand at 584.278 kb on - strand at 584.278 kb on - strand at 584.278 kb on - strand at 584.278 kb on - strand at 584.300 kb on + strand at 584.300 kb on + strand at 584.301 kb on - strand at 584.301 kb on - strand at 584.301 kb on - strand at 584.301 kb on - strand at 584.365 kb on + strand at 584.365 kb on + strand at 584.365 kb on + strand at 584.366 kb on - strand at 584.366 kb on - strand at 584.366 kb on - strand at 584.406 kb on + strand at 584.406 kb on + strand at 584.421 kb on + strand at 584.421 kb on + strand at 584.422 kb on - strand at 584.422 kb on - strand at 584.422 kb on - strand at 584.430 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.437 kb on + strand at 584.438 kb on - strand at 584.438 kb on - strand at 584.438 kb on - strand at 584.438 kb on - strand at 584.520 kb on + strand at 584.520 kb on + strand at 584.520 kb on + strand at 584.521 kb on - strand at 584.551 kb on - strand, within GFF864 at 584.551 kb on - strand, within GFF864 at 584.551 kb on - strand, within GFF864 at 584.551 kb on - strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.553 kb on + strand, within GFF864 at 584.554 kb on - strand, within GFF864 at 584.554 kb on - strand, within GFF864 at 584.554 kb on - strand, within GFF864 at 584.644 kb on - strand, within GFF864 at 584.730 kb on + strand at 584.730 kb on + strand at 584.730 kb on + strand at 584.730 kb on + strand at 584.731 kb on - strand at 584.731 kb on - strand at 584.787 kb on + strand at 584.787 kb on + strand at 584.787 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.848 kb on + strand at 584.849 kb on - strand at 584.849 kb on - strand at 584.849 kb on - strand at 584.849 kb on - strand at 584.849 kb on - strand at 584.849 kb on - strand at 584.849 kb on - strand at 585.026 kb on + strand at 585.026 kb on + strand at 585.026 kb on + strand at 585.027 kb on - strand at 585.027 kb on - strand at 585.063 kb on + strand at 585.063 kb on + strand at 585.063 kb on + strand at 585.064 kb on - strand at 585.064 kb on - strand at 585.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 582,672 + -0.3 582,673 - -0.2 582,673 - -0.6 582,673 - +0.1 582,673 - +0.3 582,704 + -0.9 582,704 + -0.1 582,704 + -0.2 582,704 + +0.4 582,705 - +0.4 582,705 - -0.2 582,705 - +0.0 582,705 - +0.2 582,705 - +0.7 582,705 - -0.0 582,728 + -0.2 582,729 - -0.3 582,739 - -0.1 582,765 - +0.2 582,863 + -1.0 582,863 + -0.2 582,863 + +0.5 582,864 - +0.1 582,893 + +0.2 582,894 - +0.3 582,894 - +0.4 582,894 - +0.4 582,894 - +0.4 582,908 + +1.1 582,960 + +1.2 582,960 + +0.5 582,960 + -0.9 582,960 + +0.5 582,960 + -1.3 582,960 + -0.4 582,961 - -0.2 582,961 - -0.2 582,961 - +0.1 582,961 - +0.1 582,961 - -0.2 582,987 + -0.2 582,987 + +0.0 582,987 + -0.9 582,987 + +0.9 582,987 + +0.2 582,987 + +0.0 582,987 + +0.2 582,988 - +1.5 582,988 - -0.5 582,988 - +0.2 582,988 - +0.6 582,989 + -0.5 582,989 + +0.1 582,989 + +0.2 582,989 + -0.3 582,989 + +0.7 582,989 + -0.4 582,990 - +0.5 582,990 - -0.3 582,990 - -1.8 582,990 - -0.1 582,990 - +0.1 582,990 - -0.5 582,990 - -1.2 582,990 - -0.5 582,990 - +0.2 582,990 - -0.1 582,991 - +0.5 583,082 + +0.1 583,123 + -0.4 583,124 - +0.8 583,124 - -0.3 583,124 - +0.3 583,124 - -0.5 583,152 + +2.0 583,152 + +0.7 583,152 + -0.3 583,152 + -0.1 583,152 + -0.1 583,152 + +0.5 583,152 + -0.7 583,152 + -0.4 583,152 + -0.0 583,152 + +0.0 583,152 + +0.1 583,152 + -0.0 583,152 + +0.3 583,152 + -0.1 583,152 + -0.7 583,153 + -0.1 583,153 - -0.5 583,153 - +0.5 583,153 - +0.1 583,153 - +0.3 583,153 - +0.2 583,153 - -0.3 583,153 - -0.0 583,153 - -0.0 583,153 - -0.2 583,153 - +0.2 583,153 - -0.1 583,153 - -1.5 583,153 - +0.0 583,153 - -0.4 583,153 - +0.8 583,153 - +1.0 583,225 + +0.4 583,231 + -0.9 583,231 + -0.1 583,231 + +0.2 583,231 + -0.5 583,231 + +0.1 583,231 + +0.4 583,231 + -0.0 583,232 - +0.1 583,232 - -0.1 583,232 - -0.0 583,232 - -0.1 583,232 - +0.7 583,232 - +0.3 583,232 - +0.5 583,232 - +0.2 583,232 - -0.7 583,232 - -0.3 583,232 - -0.3 583,232 - -1.1 583,232 - +0.4 583,260 + -0.1 583,322 + +0.6 583,322 + +0.5 583,322 + -0.1 583,323 - +1.2 583,323 - -0.6 583,427 + -0.2 583,428 - -0.2 583,575 + GFF863 0.21 +0.2 583,628 + GFF863 0.29 -0.8 583,629 - GFF863 0.29 +0.3 583,629 - GFF863 0.29 -0.0 583,629 - GFF863 0.29 -0.5 583,629 - GFF863 0.29 -0.1 583,638 + GFF863 0.31 +0.4 583,717 - GFF863 0.43 -0.1 583,726 + GFF863 0.45 -0.2 583,727 - GFF863 0.45 +0.0 583,731 - GFF863 0.46 +0.0 583,731 - GFF863 0.46 -0.9 583,845 + GFF863 0.64 -1.2 583,845 + GFF863 0.64 -0.2 583,845 + GFF863 0.64 -0.1 583,846 - GFF863 0.64 +0.6 583,847 + GFF863 0.64 -0.4 583,847 + GFF863 0.64 -0.5 583,847 + GFF863 0.64 +0.8 583,847 + GFF863 0.64 +0.1 583,847 + GFF863 0.64 -0.2 583,847 + GFF863 0.64 -0.7 583,847 + GFF863 0.64 +0.2 583,848 - GFF863 0.65 -0.1 583,848 - GFF863 0.65 +0.2 583,848 - GFF863 0.65 +0.9 583,875 + GFF863 0.69 -0.1 583,875 + GFF863 0.69 -0.2 583,876 - GFF863 0.69 -0.2 583,911 + GFF863 0.75 -0.9 583,911 + GFF863 0.75 -0.2 583,911 + GFF863 0.75 -1.3 583,911 + GFF863 0.75 -0.4 583,912 - GFF863 0.75 -0.2 584,112 + +0.9 584,119 - -1.4 584,146 - -0.5 584,277 + +0.4 584,277 + -0.5 584,277 + +0.9 584,278 - -0.5 584,278 - +1.1 584,278 - -0.0 584,278 - -0.1 584,300 + -2.5 584,300 + -0.8 584,301 - -0.1 584,301 - -0.5 584,301 - +0.5 584,301 - -1.3 584,365 + +0.5 584,365 + -0.2 584,365 + +1.0 584,366 - +0.3 584,366 - +0.2 584,366 - -1.1 584,406 + -0.7 584,406 + +0.4 584,421 + +0.0 584,421 + +0.7 584,422 - -0.6 584,422 - +0.7 584,422 - -0.2 584,430 + +0.9 584,437 + +0.1 584,437 + +0.3 584,437 + -0.2 584,437 + +0.5 584,437 + +0.5 584,437 + -0.5 584,437 + +0.1 584,437 + -0.3 584,438 - +0.1 584,438 - -0.4 584,438 - -0.4 584,438 - -0.2 584,520 + -0.8 584,520 + +0.9 584,520 + +0.2 584,521 - -0.4 584,551 - GFF864 0.15 -0.5 584,551 - GFF864 0.15 -0.1 584,551 - GFF864 0.15 +0.7 584,551 - GFF864 0.15 -0.4 584,553 + GFF864 0.16 -0.7 584,553 + GFF864 0.16 -0.2 584,553 + GFF864 0.16 +0.7 584,553 + GFF864 0.16 -0.2 584,553 + GFF864 0.16 +0.6 584,553 + GFF864 0.16 -1.2 584,554 - GFF864 0.16 -0.2 584,554 - GFF864 0.16 -1.2 584,554 - GFF864 0.16 +0.3 584,644 - GFF864 0.57 -0.0 584,730 + -0.8 584,730 + -0.0 584,730 + +0.5 584,730 + +0.2 584,731 - -0.0 584,731 - +0.9 584,787 + -0.2 584,787 + +0.2 584,787 + +0.4 584,848 + +0.6 584,848 + +0.2 584,848 + -0.5 584,848 + -0.8 584,848 + +1.6 584,848 + -0.1 584,848 + -0.0 584,848 + +0.1 584,849 - -0.0 584,849 - +0.4 584,849 - -0.3 584,849 - -0.9 584,849 - +0.1 584,849 - -0.0 584,849 - +0.2 585,026 + +0.7 585,026 + +0.4 585,026 + -0.6 585,027 - -0.2 585,027 - +0.2 585,063 + -0.7 585,063 + -0.8 585,063 + -0.1 585,064 - +1.3 585,064 - +0.7 585,064 - +0.0
Or see this region's nucleotide sequence