Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF82

Experiment: Ying_Nucleobase14 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF80 and GFF81 are separated by 4 nucleotidesGFF81 and GFF82 are separated by 18 nucleotidesGFF82 and GFF83 are separated by 32 nucleotides GFF80 - MotA/TolQ/ExbB proton channel family protein, at 89,499 to 91,241 GFF80 GFF81 - Biopolymer transport protein ExbD/TolR, at 91,246 to 91,656 GFF81 GFF82 - Ferric siderophore transport system, periplasmic binding protein TonB, at 91,675 to 92,337 GFF82 GFF83 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 92,370 to 93,929 GFF83 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 91.144 kb on - strandat 91.231 kb on - strandat 91.231 kb on - strandat 91.750 kb on + strand, within GFF82

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
remove
91,144 - +0.3
91,231 - -0.4
91,231 - -0.2
91,750 + GFF82 0.11 -0.3

Or see this region's nucleotide sequence