Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF784 and GFF785 are separated by 244 nucleotides GFF785 and GFF786 are separated by 101 nucleotides
GFF784 - RNA polymerase sigma factor RpoH, at 479,677 to 480,624
GFF784
GFF785 - Transcriptional regulator ligR, LysR family, at 480,869 to 481,795
GFF785
GFF786 - probable polyketide cyclase, at 481,897 to 482,895
GFF786
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 480.550 kb on + strand at 480.610 kb on + strand at 480.610 kb on + strand at 480.610 kb on + strand at 480.611 kb on - strand at 480.611 kb on - strand at 480.611 kb on - strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.657 kb on + strand at 480.658 kb on - strand at 480.667 kb on + strand at 480.668 kb on - strand at 480.680 kb on + strand at 480.828 kb on - strand at 480.890 kb on + strand at 480.891 kb on - strand at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.206 kb on - strand, within GFF785 at 481.217 kb on + strand, within GFF785 at 481.218 kb on - strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.682 kb on + strand, within GFF785 at 481.683 kb on - strand, within GFF785 at 481.806 kb on + strand at 481.806 kb on + strand at 481.807 kb on - strand at 481.807 kb on - strand at 481.807 kb on - strand at 481.839 kb on + strand at 482.233 kb on + strand, within GFF786
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 480,550 + -0.6 480,610 + -0.1 480,610 + -1.1 480,610 + +0.3 480,611 - -0.5 480,611 - -0.7 480,611 - -0.9 480,657 + +0.4 480,657 + +0.7 480,657 + -0.3 480,657 + -0.8 480,657 + -1.0 480,658 - -0.4 480,667 + -0.7 480,668 - -0.4 480,680 + -0.3 480,828 - -0.2 480,890 + -0.1 480,891 - +0.1 481,088 + GFF785 0.24 -0.2 481,088 + GFF785 0.24 +0.6 481,088 + GFF785 0.24 -0.5 481,088 + GFF785 0.24 -0.6 481,089 - GFF785 0.24 +0.7 481,089 - GFF785 0.24 +1.1 481,089 - GFF785 0.24 +0.5 481,206 - GFF785 0.36 -0.3 481,217 + GFF785 0.38 -0.9 481,218 - GFF785 0.38 -1.5 481,265 + GFF785 0.43 +0.5 481,265 + GFF785 0.43 -0.3 481,265 + GFF785 0.43 -0.1 481,682 + GFF785 0.88 -0.1 481,683 - GFF785 0.88 -0.3 481,806 + +1.3 481,806 + +0.3 481,807 - +0.1 481,807 - +0.6 481,807 - +0.1 481,839 + +0.3 482,233 + GFF786 0.34 -0.8
Or see this region's nucleotide sequence