Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF676 and GFF677 are separated by 51 nucleotides GFF677 and GFF678 are separated by 80 nucleotides GFF678 and GFF679 are separated by 0 nucleotides GFF679 and GFF680 overlap by 2 nucleotides
GFF676 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 361,076 to 361,732
GFF676
GFF677 - FIG00433688: hypothetical protein, at 361,784 to 362,218
GFF677
GFF678 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 362,299 to 363,501
GFF678
GFF679 - Putative membrane protein, at 363,502 to 364,140
GFF679
GFF680 - FIG00761799: membrane protein, at 364,139 to 364,960
GFF680
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.305 kb on - strand, within GFF676 at 361.343 kb on - strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.392 kb on - strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.524 kb on - strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.578 kb on - strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.644 kb on - strand, within GFF676 at 361.676 kb on + strand at 361.676 kb on + strand at 361.676 kb on + strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.822 kb on - strand at 361.822 kb on - strand at 362.091 kb on + strand, within GFF677 at 362.092 kb on - strand, within GFF677 at 362.267 kb on + strand at 362.267 kb on + strand at 362.268 kb on - strand at 362.719 kb on + strand, within GFF678 at 362.719 kb on + strand, within GFF678 at 362.720 kb on - strand, within GFF678 at 362.720 kb on - strand, within GFF678 at 362.770 kb on + strand, within GFF678 at 362.771 kb on - strand, within GFF678 at 362.771 kb on - strand, within GFF678 at 362.818 kb on + strand, within GFF678 at 362.819 kb on - strand, within GFF678 at 363.626 kb on + strand, within GFF679 at 363.626 kb on + strand, within GFF679 at 363.626 kb on + strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.659 kb on + strand, within GFF679 at 363.659 kb on + strand, within GFF679 at 363.660 kb on - strand, within GFF679 at 364.232 kb on + strand, within GFF680 at 364.233 kb on - strand, within GFF680
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 361,305 - GFF676 0.35 +1.2 361,343 - GFF676 0.41 +1.5 361,391 + GFF676 0.48 +1.1 361,391 + GFF676 0.48 -0.8 361,391 + GFF676 0.48 +0.3 361,392 - GFF676 0.48 +0.6 361,523 + GFF676 0.68 +0.4 361,523 + GFF676 0.68 +0.9 361,523 + GFF676 0.68 +1.5 361,524 - GFF676 0.68 +0.0 361,577 + GFF676 0.76 +1.3 361,577 + GFF676 0.76 +0.4 361,578 - GFF676 0.76 +0.6 361,643 + GFF676 0.86 +0.8 361,643 + GFF676 0.86 +0.6 361,643 + GFF676 0.86 +1.0 361,643 + GFF676 0.86 +0.5 361,644 - GFF676 0.86 +0.5 361,676 + +0.7 361,676 + +0.9 361,676 + +1.3 361,677 - +1.1 361,677 - +1.2 361,677 - +1.4 361,677 - +0.9 361,677 - +0.1 361,677 - +1.7 361,677 - +1.8 361,821 + -0.7 361,821 + +0.2 361,821 + -0.4 361,821 + -0.1 361,821 + -0.4 361,821 + +0.5 361,821 + +0.3 361,821 + +0.6 361,821 + +0.6 361,822 - +1.7 361,822 - -0.2 362,091 + GFF677 0.71 +0.2 362,092 - GFF677 0.71 -0.7 362,267 + -0.1 362,267 + +0.4 362,268 - -0.3 362,719 + GFF678 0.35 +0.7 362,719 + GFF678 0.35 +0.0 362,720 - GFF678 0.35 -0.1 362,720 - GFF678 0.35 +0.3 362,770 + GFF678 0.39 +0.1 362,771 - GFF678 0.39 +0.7 362,771 - GFF678 0.39 +0.0 362,818 + GFF678 0.43 -1.8 362,819 - GFF678 0.43 +1.5 363,626 + GFF679 0.19 -0.0 363,626 + GFF679 0.19 +0.0 363,626 + GFF679 0.19 -0.1 363,627 - GFF679 0.20 +0.2 363,627 - GFF679 0.20 -1.2 363,627 - GFF679 0.20 -0.6 363,627 - GFF679 0.20 +1.6 363,627 - GFF679 0.20 -0.9 363,659 + GFF679 0.25 +0.8 363,659 + GFF679 0.25 +0.1 363,660 - GFF679 0.25 -0.1 364,232 + GFF680 0.11 -1.1 364,233 - GFF680 0.11 -0.8
Or see this region's nucleotide sequence