Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF678

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF676 and GFF677 are separated by 51 nucleotidesGFF677 and GFF678 are separated by 80 nucleotidesGFF678 and GFF679 are separated by 0 nucleotidesGFF679 and GFF680 overlap by 2 nucleotides GFF676 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 361,076 to 361,732 GFF676 GFF677 - FIG00433688: hypothetical protein, at 361,784 to 362,218 GFF677 GFF678 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 362,299 to 363,501 GFF678 GFF679 - Putative membrane protein, at 363,502 to 364,140 GFF679 GFF680 - FIG00761799: membrane protein, at 364,139 to 364,960 GFF680 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 361.305 kb on - strand, within GFF676at 361.343 kb on - strand, within GFF676at 361.391 kb on + strand, within GFF676at 361.391 kb on + strand, within GFF676at 361.391 kb on + strand, within GFF676at 361.392 kb on - strand, within GFF676at 361.523 kb on + strand, within GFF676at 361.523 kb on + strand, within GFF676at 361.523 kb on + strand, within GFF676at 361.524 kb on - strand, within GFF676at 361.577 kb on + strand, within GFF676at 361.577 kb on + strand, within GFF676at 361.578 kb on - strand, within GFF676at 361.643 kb on + strand, within GFF676at 361.643 kb on + strand, within GFF676at 361.643 kb on + strand, within GFF676at 361.643 kb on + strand, within GFF676at 361.644 kb on - strand, within GFF676at 361.676 kb on + strandat 361.676 kb on + strandat 361.676 kb on + strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.677 kb on - strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.821 kb on + strandat 361.822 kb on - strandat 361.822 kb on - strandat 362.091 kb on + strand, within GFF677at 362.092 kb on - strand, within GFF677at 362.267 kb on + strandat 362.267 kb on + strandat 362.268 kb on - strandat 362.719 kb on + strand, within GFF678at 362.719 kb on + strand, within GFF678at 362.720 kb on - strand, within GFF678at 362.720 kb on - strand, within GFF678at 362.770 kb on + strand, within GFF678at 362.771 kb on - strand, within GFF678at 362.771 kb on - strand, within GFF678at 362.818 kb on + strand, within GFF678at 362.819 kb on - strand, within GFF678at 363.626 kb on + strand, within GFF679at 363.626 kb on + strand, within GFF679at 363.626 kb on + strand, within GFF679at 363.627 kb on - strand, within GFF679at 363.627 kb on - strand, within GFF679at 363.627 kb on - strand, within GFF679at 363.627 kb on - strand, within GFF679at 363.627 kb on - strand, within GFF679at 363.659 kb on + strand, within GFF679at 363.659 kb on + strand, within GFF679at 363.660 kb on - strand, within GFF679at 364.232 kb on + strand, within GFF680at 364.233 kb on - strand, within GFF680

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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361,305 - GFF676 0.35 +1.2
361,343 - GFF676 0.41 +1.5
361,391 + GFF676 0.48 +1.1
361,391 + GFF676 0.48 -0.8
361,391 + GFF676 0.48 +0.3
361,392 - GFF676 0.48 +0.6
361,523 + GFF676 0.68 +0.4
361,523 + GFF676 0.68 +0.9
361,523 + GFF676 0.68 +1.5
361,524 - GFF676 0.68 +0.0
361,577 + GFF676 0.76 +1.3
361,577 + GFF676 0.76 +0.4
361,578 - GFF676 0.76 +0.6
361,643 + GFF676 0.86 +0.8
361,643 + GFF676 0.86 +0.6
361,643 + GFF676 0.86 +1.0
361,643 + GFF676 0.86 +0.5
361,644 - GFF676 0.86 +0.5
361,676 + +0.7
361,676 + +0.9
361,676 + +1.3
361,677 - +1.1
361,677 - +1.2
361,677 - +1.4
361,677 - +0.9
361,677 - +0.1
361,677 - +1.7
361,677 - +1.8
361,821 + -0.7
361,821 + +0.2
361,821 + -0.4
361,821 + -0.1
361,821 + -0.4
361,821 + +0.5
361,821 + +0.3
361,821 + +0.6
361,821 + +0.6
361,822 - +1.7
361,822 - -0.2
362,091 + GFF677 0.71 +0.2
362,092 - GFF677 0.71 -0.7
362,267 + -0.1
362,267 + +0.4
362,268 - -0.3
362,719 + GFF678 0.35 +0.7
362,719 + GFF678 0.35 +0.0
362,720 - GFF678 0.35 -0.1
362,720 - GFF678 0.35 +0.3
362,770 + GFF678 0.39 +0.1
362,771 - GFF678 0.39 +0.7
362,771 - GFF678 0.39 +0.0
362,818 + GFF678 0.43 -1.8
362,819 - GFF678 0.43 +1.5
363,626 + GFF679 0.19 -0.0
363,626 + GFF679 0.19 +0.0
363,626 + GFF679 0.19 -0.1
363,627 - GFF679 0.20 +0.2
363,627 - GFF679 0.20 -1.2
363,627 - GFF679 0.20 -0.6
363,627 - GFF679 0.20 +1.6
363,627 - GFF679 0.20 -0.9
363,659 + GFF679 0.25 +0.8
363,659 + GFF679 0.25 +0.1
363,660 - GFF679 0.25 -0.1
364,232 + GFF680 0.11 -1.1
364,233 - GFF680 0.11 -0.8

Or see this region's nucleotide sequence