Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF622 and GFF623 overlap by 4 nucleotides GFF623 and GFF624 overlap by 4 nucleotides GFF624 and GFF625 are separated by 26 nucleotides
GFF622 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 297,648 to 298,943
GFF622
GFF623 - protease, putative, at 298,940 to 300,754
GFF623
GFF624 - Thiol:disulfide interchange protein DsbC, at 300,751 to 301,464
GFF624
GFF625 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 301,491 to 302,594
GFF625
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.050 kb on + strand, within GFF622 at 298.051 kb on - strand, within GFF622 at 298.089 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on + strand, within GFF622 at 298.203 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.204 kb on - strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.353 kb on + strand, within GFF622 at 298.354 kb on - strand, within GFF622 at 298.441 kb on - strand, within GFF622 at 298.713 kb on + strand, within GFF622 at 298.714 kb on - strand, within GFF622 at 298.941 kb on + strand at 298.941 kb on + strand at 299.379 kb on + strand, within GFF623 at 299.544 kb on + strand, within GFF623 at 299.545 kb on - strand, within GFF623 at 299.545 kb on - strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.547 kb on + strand, within GFF623 at 299.548 kb on - strand, within GFF623 at 299.587 kb on - strand, within GFF623 at 299.589 kb on + strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.590 kb on - strand, within GFF623 at 299.688 kb on + strand, within GFF623 at 299.688 kb on + strand, within GFF623 at 299.689 kb on - strand, within GFF623 at 299.689 kb on - strand, within GFF623 at 299.736 kb on + strand, within GFF623 at 299.739 kb on + strand, within GFF623 at 299.793 kb on + strand, within GFF623 at 299.794 kb on - strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.851 kb on - strand, within GFF623 at 299.995 kb on - strand, within GFF623 at 300.012 kb on + strand, within GFF623 at 300.013 kb on - strand, within GFF623 at 300.013 kb on - strand, within GFF623 at 300.027 kb on + strand, within GFF623 at 300.027 kb on + strand, within GFF623 at 300.229 kb on - strand, within GFF623 at 300.266 kb on + strand, within GFF623 at 300.267 kb on - strand, within GFF623 at 300.588 kb on + strand at 300.589 kb on - strand at 300.589 kb on - strand at 301.019 kb on + strand, within GFF624 at 301.257 kb on - strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.310 kb on + strand, within GFF624 at 301.310 kb on + strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 298,050 + GFF622 0.31 -0.3 298,051 - GFF622 0.31 -0.5 298,089 + GFF622 0.34 -0.1 298,203 + GFF622 0.43 -0.5 298,203 + GFF622 0.43 +0.2 298,203 + GFF622 0.43 -0.4 298,203 + GFF622 0.43 +0.2 298,203 - GFF622 0.43 -0.1 298,204 - GFF622 0.43 +1.7 298,204 - GFF622 0.43 +0.4 298,353 + GFF622 0.54 -0.2 298,353 + GFF622 0.54 -0.2 298,353 + GFF622 0.54 -0.2 298,353 + GFF622 0.54 +0.3 298,354 - GFF622 0.54 +0.3 298,441 - GFF622 0.61 -0.5 298,713 + GFF622 0.82 +0.0 298,714 - GFF622 0.82 -2.0 298,941 + -0.0 298,941 + +0.5 299,379 + GFF623 0.24 +0.8 299,544 + GFF623 0.33 +0.7 299,545 - GFF623 0.33 +0.0 299,545 - GFF623 0.33 +0.4 299,547 + GFF623 0.33 +0.5 299,547 + GFF623 0.33 +0.2 299,547 + GFF623 0.33 +0.3 299,548 - GFF623 0.33 +0.3 299,587 - GFF623 0.36 +1.1 299,589 + GFF623 0.36 +1.3 299,590 - GFF623 0.36 +0.2 299,590 - GFF623 0.36 +0.8 299,590 - GFF623 0.36 +0.0 299,688 + GFF623 0.41 -0.7 299,688 + GFF623 0.41 +0.3 299,689 - GFF623 0.41 +0.3 299,689 - GFF623 0.41 +0.6 299,736 + GFF623 0.44 +0.5 299,739 + GFF623 0.44 +0.2 299,793 + GFF623 0.47 +0.6 299,794 - GFF623 0.47 +0.0 299,850 + GFF623 0.50 +1.0 299,850 + GFF623 0.50 +0.2 299,850 + GFF623 0.50 -0.8 299,850 + GFF623 0.50 +0.7 299,851 - GFF623 0.50 -0.4 299,995 - GFF623 0.58 -0.1 300,012 + GFF623 0.59 -0.3 300,013 - GFF623 0.59 +0.5 300,013 - GFF623 0.59 +0.2 300,027 + GFF623 0.60 -0.5 300,027 + GFF623 0.60 +0.3 300,229 - GFF623 0.71 -0.8 300,266 + GFF623 0.73 +0.1 300,267 - GFF623 0.73 +0.7 300,588 + +0.6 300,589 - -1.3 300,589 - -0.1 301,019 + GFF624 0.38 +0.1 301,257 - GFF624 0.71 +1.1 301,277 + GFF624 0.74 -0.6 301,277 + GFF624 0.74 -1.4 301,277 + GFF624 0.74 +0.5 301,310 + GFF624 0.78 -0.5 301,310 + GFF624 0.78 -0.7 301,311 - GFF624 0.78 +1.5 301,311 - GFF624 0.78 +1.1 301,311 - GFF624 0.78 +0.2 301,311 - GFF624 0.78 -0.7 301,311 - GFF624 0.78 -1.7
Or see this region's nucleotide sequence