Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5853

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5852 and GFF5853 are separated by 584 nucleotidesGFF5853 and GFF5854 overlap by 4 nucleotides GFF5852 - Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), at 54,920 to 55,882 GFF5852 GFF5853 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,467 to 57,015 GFF5853 GFF5854 - Enoyl-CoA hydratase (EC 4.2.1.17), at 57,012 to 57,887 GFF5854 Position (kb) 56 57 58Strain fitness (log2 ratio) -1 0 1 2at 55.556 kb on - strand, within GFF5852at 55.566 kb on + strand, within GFF5852at 55.569 kb on - strand, within GFF5852at 55.569 kb on - strand, within GFF5852at 55.595 kb on - strand, within GFF5852at 55.678 kb on - strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.743 kb on + strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.744 kb on - strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.747 kb on + strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.748 kb on - strand, within GFF5852at 55.852 kb on - strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.902 kb on + strandat 55.903 kb on - strandat 56.055 kb on + strandat 56.055 kb on + strandat 56.056 kb on - strandat 56.056 kb on - strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.135 kb on + strandat 56.222 kb on + strandat 56.222 kb on + strandat 56.223 kb on - strandat 56.223 kb on - strandat 56.262 kb on - strandat 56.289 kb on + strandat 56.289 kb on + strandat 56.289 kb on + strandat 56.290 kb on - strandat 56.290 kb on - strandat 56.294 kb on + strandat 56.294 kb on + strandat 56.294 kb on + strandat 56.295 kb on - strandat 56.295 kb on - strandat 56.295 kb on - strandat 56.408 kb on - strandat 56.420 kb on + strandat 56.421 kb on - strandat 56.466 kb on - strandat 56.466 kb on - strandat 56.476 kb on + strandat 56.476 kb on + strandat 56.573 kb on + strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.574 kb on - strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.855 kb on + strand, within GFF5853at 56.856 kb on - strand, within GFF5853at 56.856 kb on - strand, within GFF5853at 56.908 kb on + strand, within GFF5853at 56.908 kb on + strand, within GFF5853at 56.919 kb on - strand, within GFF5853at 56.919 kb on - strand, within GFF5853at 56.919 kb on - strand, within GFF5853at 56.933 kb on + strand, within GFF5853at 57.018 kb on + strandat 57.018 kb on + strandat 57.019 kb on - strandat 57.019 kb on - strandat 57.269 kb on + strand, within GFF5854at 57.269 kb on + strand, within GFF5854at 57.269 kb on + strand, within GFF5854at 57.270 kb on - strand, within GFF5854at 57.297 kb on - strand, within GFF5854at 57.302 kb on - strand, within GFF5854at 57.357 kb on - strand, within GFF5854at 57.357 kb on - strand, within GFF5854at 57.357 kb on - strand, within GFF5854at 57.397 kb on + strand, within GFF5854at 57.397 kb on + strand, within GFF5854at 57.398 kb on - strand, within GFF5854at 57.552 kb on + strand, within GFF5854at 57.552 kb on + strand, within GFF5854at 57.553 kb on - strand, within GFF5854at 57.553 kb on - strand, within GFF5854at 57.553 kb on - strand, within GFF5854at 57.553 kb on - strand, within GFF5854at 57.642 kb on + strand, within GFF5854at 57.642 kb on + strand, within GFF5854at 57.643 kb on - strand, within GFF5854at 57.643 kb on - strand, within GFF5854at 57.643 kb on - strand, within GFF5854at 57.649 kb on + strand, within GFF5854at 57.650 kb on - strand, within GFF5854at 57.686 kb on + strand, within GFF5854at 57.686 kb on + strand, within GFF5854at 57.686 kb on + strand, within GFF5854at 57.697 kb on + strand, within GFF5854at 57.711 kb on + strand, within GFF5854at 57.911 kb on - strandat 57.979 kb on + strandat 57.979 kb on + strandat 57.988 kb on + strandat 57.989 kb on - strandat 57.989 kb on - strandat 57.989 kb on - strandat 57.989 kb on - strandat 57.989 kb on - strandat 57.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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55,556 - GFF5852 0.66 -0.8
55,566 + GFF5852 0.67 +0.5
55,569 - GFF5852 0.67 -0.3
55,569 - GFF5852 0.67 +0.3
55,595 - GFF5852 0.70 +0.1
55,678 - GFF5852 0.79 -0.5
55,743 + GFF5852 0.85 -0.1
55,743 + GFF5852 0.85 +0.9
55,743 + GFF5852 0.85 -0.2
55,743 + GFF5852 0.85 -0.3
55,743 + GFF5852 0.85 +0.3
55,743 + GFF5852 0.85 -0.4
55,743 + GFF5852 0.85 +0.1
55,743 + GFF5852 0.85 -0.5
55,743 + GFF5852 0.85 +0.4
55,744 - GFF5852 0.86 +0.0
55,744 - GFF5852 0.86 -0.3
55,744 - GFF5852 0.86 +0.3
55,744 - GFF5852 0.86 -0.5
55,744 - GFF5852 0.86 -0.3
55,744 - GFF5852 0.86 -1.1
55,744 - GFF5852 0.86 -0.1
55,744 - GFF5852 0.86 +0.4
55,747 + GFF5852 0.86 +0.4
55,747 + GFF5852 0.86 -0.0
55,747 + GFF5852 0.86 -0.6
55,747 + GFF5852 0.86 -0.2
55,747 + GFF5852 0.86 +0.4
55,747 + GFF5852 0.86 +1.2
55,747 + GFF5852 0.86 -0.6
55,747 + GFF5852 0.86 +0.3
55,747 + GFF5852 0.86 -0.6
55,748 - GFF5852 0.86 -0.6
55,748 - GFF5852 0.86 -0.5
55,748 - GFF5852 0.86 +0.2
55,748 - GFF5852 0.86 +0.3
55,852 - +0.1
55,902 + -0.5
55,902 + +0.2
55,902 + +0.0
55,902 + -0.7
55,902 + -1.7
55,903 - -0.1
56,055 + +0.0
56,055 + -0.2
56,056 - +0.6
56,056 - +1.0
56,122 + -0.3
56,122 + +0.5
56,135 + +0.4
56,222 + -0.0
56,222 + +0.4
56,223 - -0.7
56,223 - -0.7
56,262 - -0.2
56,289 + -0.3
56,289 + +0.3
56,289 + +0.4
56,290 - +0.1
56,290 - -0.4
56,294 + -1.3
56,294 + +1.1
56,294 + +0.2
56,295 - +0.1
56,295 - -0.4
56,295 - +0.7
56,408 - +0.1
56,420 + -0.2
56,421 - +0.1
56,466 - +0.3
56,466 - -0.2
56,476 + -0.7
56,476 + -1.0
56,573 + GFF5853 0.19 +0.4
56,574 - GFF5853 0.19 +0.6
56,574 - GFF5853 0.19 +0.6
56,574 - GFF5853 0.19 +0.2
56,855 + GFF5853 0.71 +0.4
56,855 + GFF5853 0.71 -0.8
56,855 + GFF5853 0.71 +0.6
56,856 - GFF5853 0.71 -0.3
56,856 - GFF5853 0.71 +0.6
56,908 + GFF5853 0.80 +0.0
56,908 + GFF5853 0.80 -0.1
56,919 - GFF5853 0.82 -0.1
56,919 - GFF5853 0.82 -1.2
56,919 - GFF5853 0.82 +0.5
56,933 + GFF5853 0.85 +0.6
57,018 + +0.4
57,018 + -0.2
57,019 - -0.1
57,019 - -0.1
57,269 + GFF5854 0.29 -0.1
57,269 + GFF5854 0.29 +0.3
57,269 + GFF5854 0.29 -1.1
57,270 - GFF5854 0.29 -0.6
57,297 - GFF5854 0.33 -0.3
57,302 - GFF5854 0.33 +0.7
57,357 - GFF5854 0.39 -0.6
57,357 - GFF5854 0.39 +0.2
57,357 - GFF5854 0.39 +2.2
57,397 + GFF5854 0.44 -0.1
57,397 + GFF5854 0.44 -0.4
57,398 - GFF5854 0.44 -0.2
57,552 + GFF5854 0.62 +0.4
57,552 + GFF5854 0.62 -1.0
57,553 - GFF5854 0.62 -1.4
57,553 - GFF5854 0.62 -0.5
57,553 - GFF5854 0.62 -0.2
57,553 - GFF5854 0.62 -0.3
57,642 + GFF5854 0.72 -0.8
57,642 + GFF5854 0.72 +0.3
57,643 - GFF5854 0.72 -0.3
57,643 - GFF5854 0.72 -0.1
57,643 - GFF5854 0.72 +0.8
57,649 + GFF5854 0.73 -1.1
57,650 - GFF5854 0.73 -0.0
57,686 + GFF5854 0.77 -0.1
57,686 + GFF5854 0.77 -1.1
57,686 + GFF5854 0.77 -0.4
57,697 + GFF5854 0.78 +0.0
57,711 + GFF5854 0.80 +0.1
57,911 - -0.4
57,979 + +0.3
57,979 + +0.4
57,988 + +0.1
57,989 - +0.1
57,989 - -0.3
57,989 - -0.4
57,989 - -0.2
57,989 - -0.5
57,989 - +0.8

Or see this region's nucleotide sequence