Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5273

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,287,469	-				-1.2
2,287,469	-				-1.6
2,287,568	+				-0.9
2,287,568	+				-0.5
2,287,568	+				-0.6
2,287,569	-				+0.6
2,287,569	-				-0.2
2,287,777	+				+0.1
2,287,778	-				+0.8
2,287,984	+		GFF5273	0.34	+0.2
2,287,985	-		GFF5273	0.34	+0.1
2,287,985	-		GFF5273	0.34	+0.3
2,287,985	-		GFF5273	0.34	+0.0
2,288,098	+		GFF5273	0.48	-0.7
2,288,098	+		GFF5273	0.48	-0.2
2,288,098	+		GFF5273	0.48	+0.4
2,288,099	-		GFF5273	0.48	+0.3
2,288,146	+		GFF5273	0.53	-0.3
2,288,706	+		GFF5274	0.20	+0.2
2,288,706	+		GFF5274	0.20	-0.6
2,288,707	-		GFF5274	0.21	-1.0
2,288,797	-		GFF5274	0.31	+0.4
2,288,797	-		GFF5274	0.31	+1.0
2,288,908	-		GFF5274	0.43	+0.2
2,289,303	+		GFF5274	0.87	+0.1
2,289,304	-		GFF5274	0.87	+0.1
2,289,304	-		GFF5274	0.87	+0.2
2,289,304	-		GFF5274	0.87	+0.2
2,289,382	-				-1.0
2,289,433	+				+0.8
2,289,433	+				+0.2
2,289,433	+				+0.9
2,289,433	+				-0.1
2,289,433	+				+0.9
2,289,433	+				-0.3
2,289,433	+				-0.3
2,289,434	-				+0.9
2,289,434	-				+0.4
2,289,434	-				-0.3
2,289,473	+				-0.1
2,289,474	-				+0.7