Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF523 and GFF524 are separated by 5 nucleotides GFF524 and GFF525 overlap by 4 nucleotides
GFF523 - Dihydroorotase (EC 3.5.2.3), at 190,461 to 191,507
GFF523
GFF524 - probable putative transmembrane protein, at 191,513 to 192,268
GFF524
GFF525 - glutamine synthetase family protein, at 192,265 to 193,650
GFF525
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.701 kb on + strand, within GFF523 at 190.701 kb on + strand, within GFF523 at 190.702 kb on - strand, within GFF523 at 190.830 kb on + strand, within GFF523 at 191.019 kb on + strand, within GFF523 at 191.077 kb on - strand, within GFF523 at 191.118 kb on + strand, within GFF523 at 191.119 kb on - strand, within GFF523 at 191.122 kb on - strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.295 kb on + strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.296 kb on - strand, within GFF523 at 191.370 kb on + strand, within GFF523 at 191.371 kb on - strand, within GFF523 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 191.679 kb on - strand, within GFF524 at 192.023 kb on + strand, within GFF524 at 192.024 kb on - strand, within GFF524 at 192.206 kb on + strand at 192.209 kb on + strand at 192.209 kb on + strand at 192.210 kb on - strand at 192.210 kb on - strand at 192.210 kb on - strand at 192.493 kb on + strand, within GFF525 at 192.494 kb on - strand, within GFF525 at 192.499 kb on + strand, within GFF525 at 192.500 kb on - strand, within GFF525 at 192.500 kb on - strand, within GFF525 at 192.592 kb on - strand, within GFF525 at 192.680 kb on - strand, within GFF525 at 192.727 kb on + strand, within GFF525 at 192.727 kb on + strand, within GFF525 at 192.928 kb on + strand, within GFF525 at 192.929 kb on - strand, within GFF525 at 192.929 kb on - strand, within GFF525 at 192.929 kb on - strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.162 kb on + strand, within GFF525 at 193.163 kb on - strand, within GFF525 at 193.163 kb on - strand, within GFF525 at 193.163 kb on - strand, within GFF525 at 193.163 kb on - strand, within GFF525 at 193.163 kb on - strand, within GFF525 at 193.207 kb on + strand, within GFF525 at 193.208 kb on - strand, within GFF525 at 193.208 kb on - strand, within GFF525 at 193.208 kb on - strand, within GFF525 at 193.228 kb on + strand, within GFF525 at 193.229 kb on - strand, within GFF525
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 190,701 + GFF523 0.23 +0.7 190,701 + GFF523 0.23 +0.3 190,702 - GFF523 0.23 +0.7 190,830 + GFF523 0.35 +0.5 191,019 + GFF523 0.53 -0.2 191,077 - GFF523 0.59 +0.2 191,118 + GFF523 0.63 +0.9 191,119 - GFF523 0.63 +0.3 191,122 - GFF523 0.63 -0.8 191,295 + GFF523 0.80 +0.7 191,295 + GFF523 0.80 +0.3 191,295 + GFF523 0.80 +0.0 191,296 - GFF523 0.80 +0.4 191,296 - GFF523 0.80 +0.5 191,296 - GFF523 0.80 -1.5 191,370 + GFF523 0.87 -0.1 191,371 - GFF523 0.87 +0.7 191,679 - GFF524 0.22 +0.4 191,679 - GFF524 0.22 -0.2 191,679 - GFF524 0.22 -0.3 191,679 - GFF524 0.22 -0.3 192,023 + GFF524 0.67 -1.6 192,024 - GFF524 0.68 -1.3 192,206 + -0.2 192,209 + -0.1 192,209 + -0.3 192,210 - -0.7 192,210 - -0.4 192,210 - -1.8 192,493 + GFF525 0.16 -1.3 192,494 - GFF525 0.17 -0.2 192,499 + GFF525 0.17 -0.6 192,500 - GFF525 0.17 +2.3 192,500 - GFF525 0.17 +0.1 192,592 - GFF525 0.24 -0.8 192,680 - GFF525 0.30 -1.2 192,727 + GFF525 0.33 -0.8 192,727 + GFF525 0.33 +0.2 192,928 + GFF525 0.48 -0.7 192,929 - GFF525 0.48 -0.4 192,929 - GFF525 0.48 -0.5 192,929 - GFF525 0.48 -0.8 193,162 + GFF525 0.65 -0.6 193,162 + GFF525 0.65 -0.1 193,162 + GFF525 0.65 -0.0 193,162 + GFF525 0.65 -0.2 193,162 + GFF525 0.65 -0.9 193,162 + GFF525 0.65 -1.3 193,162 + GFF525 0.65 -0.3 193,163 - GFF525 0.65 +0.6 193,163 - GFF525 0.65 -0.2 193,163 - GFF525 0.65 +0.2 193,163 - GFF525 0.65 +0.1 193,163 - GFF525 0.65 -0.8 193,207 + GFF525 0.68 -0.4 193,208 - GFF525 0.68 -0.1 193,208 - GFF525 0.68 -0.3 193,208 - GFF525 0.68 -0.0 193,228 + GFF525 0.69 -0.3 193,229 - GFF525 0.70 -0.1
Or see this region's nucleotide sequence