Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5134

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,144,233	+				-1.2
2,144,234	-				-0.4
2,144,453	+		GFF5133	0.22	+1.1
2,144,453	+		GFF5133	0.22	+0.1
2,144,454	-		GFF5133	0.22	-0.2
2,144,454	-		GFF5133	0.22	-0.8
2,144,834	+		GFF5133	0.63	-0.5
2,144,834	+		GFF5133	0.63	+0.0
2,144,834	+		GFF5133	0.63	+0.2
2,144,834	+		GFF5133	0.63	-0.4
2,144,835	-		GFF5133	0.63	-0.2
2,144,835	-		GFF5133	0.63	+1.0
2,144,835	-		GFF5133	0.63	-0.2
2,145,222	+				-0.3
2,145,222	+				+0.2
2,145,222	+				-0.9
2,145,222	+				-0.3
2,145,222	+				+0.2
2,145,222	+				-0.2
2,145,222	+				-1.3
2,145,222	+				+0.2
2,145,223	-				-0.0
2,145,249	+				-0.8
2,145,250	-				+0.1
2,145,369	+				-0.5
2,145,370	-				+0.1
2,145,370	-				+0.2
2,145,376	-		GFF5134	0.10	-2.6
2,145,393	+		GFF5134	0.11	+1.3
2,145,394	-		GFF5134	0.11	+1.5
2,145,553	-		GFF5134	0.20	+0.1
2,145,582	+		GFF5134	0.22	-0.1
2,145,678	+		GFF5134	0.27	-0.1
2,145,678	+		GFF5134	0.27	+0.9
2,145,679	-		GFF5134	0.28	+0.3
2,145,679	-		GFF5134	0.28	-0.4
2,145,798	+		GFF5134	0.34	-0.1
2,145,798	+		GFF5134	0.34	+0.2
2,145,798	+		GFF5134	0.34	-0.4
2,145,799	-		GFF5134	0.34	-0.1
2,145,799	-		GFF5134	0.34	-0.2
2,146,108	-		GFF5134	0.52	+0.0
2,146,122	+		GFF5134	0.53	+0.2
2,146,122	+		GFF5134	0.53	-0.1
2,146,122	+		GFF5134	0.53	+0.8
2,146,122	+		GFF5134	0.53	-0.5
2,146,122	+		GFF5134	0.53	-1.1
2,146,123	-		GFF5134	0.53	-0.6
2,146,123	-		GFF5134	0.53	-0.5
2,146,123	-		GFF5134	0.53	-0.5
2,146,371	+		GFF5134	0.67	+0.2
2,146,453	-		GFF5134	0.72	-0.3
2,146,453	-		GFF5134	0.72	+0.2
2,146,453	-		GFF5134	0.72	+0.6
2,146,453	-		GFF5134	0.72	-0.4
2,146,656	+		GFF5134	0.83	-1.2
2,146,701	+		GFF5134	0.86	+0.1
2,146,701	+		GFF5134	0.86	-0.4
2,146,701	+		GFF5134	0.86	-0.5
2,146,702	-		GFF5134	0.86	+0.4
2,146,702	-		GFF5134	0.86	+0.5
2,146,702	-		GFF5134	0.86	+0.6
2,146,702	-		GFF5134	0.86	+0.1
2,146,761	+		GFF5134	0.89	-1.0
2,146,761	+		GFF5134	0.89	-0.6
2,146,762	-		GFF5134	0.89	+0.3
2,146,762	-		GFF5134	0.89	-0.8
2,146,762	-		GFF5134	0.89	+0.8
2,146,762	-		GFF5134	0.89	-1.7
2,146,815	+				-0.2
2,146,815	+				-0.2
2,146,815	+				+0.5
2,146,815	+				+0.4
2,146,816	-				+1.7
2,146,860	+				-0.4
2,146,860	+				+0.5
2,146,860	+				+0.7
2,146,860	+				+0.8
2,146,861	-				+0.3
2,146,861	-				+0.9
2,146,861	-				-0.6
2,146,899	+				-1.4
2,146,900	-				-0.3
2,146,900	-				+0.8
2,146,998	+		GFF5135	0.52	+0.1
2,146,999	-		GFF5135	0.52	-0.1
2,147,066	+				+1.4
2,147,066	+				-1.1
2,147,067	-				-0.1
2,147,067	-				-0.5