Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5085

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,099,083	+		GFF5084	0.25	-1.3
2,099,083	+		GFF5084	0.25	-0.0
2,099,084	-		GFF5084	0.25	-0.1
2,099,113	+		GFF5084	0.28	+0.0
2,099,687	-		GFF5084	0.90	+0.5
2,099,773	+				+0.3
2,099,773	+				+1.2
2,099,773	+				+0.3
2,099,774	-				-0.0
2,100,060	-		GFF5085	0.17	-0.3
2,100,599	+		GFF5085	0.51	+0.2
2,101,004	+		GFF5085	0.77	-0.9
2,101,004	+		GFF5085	0.77	+0.1
2,101,004	+		GFF5085	0.77	+0.6
2,101,005	-		GFF5085	0.77	-1.0
2,101,155	-		GFF5085	0.87	-0.4
2,101,283	+				+0.5
2,101,283	+				-1.3
2,101,455	+		GFF5086	0.12	+1.5
2,101,573	-		GFF5086	0.27	-0.1
2,101,573	-		GFF5086	0.27	-0.1
2,101,573	-		GFF5086	0.27	+0.2
2,101,591	-		GFF5086	0.30	+0.8
2,101,627	-		GFF5086	0.34	+0.6
2,102,106	+				-0.3
2,102,106	+				-0.4
2,102,106	+				+0.3
2,102,200	+				+0.4
2,102,219	+				-0.9