Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5044

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,056,009	+		GFF5043	0.49	-0.0
2,056,009	+		GFF5043	0.49	+1.1
2,056,112	-		GFF5043	0.57	+0.3
2,056,130	-		GFF5043	0.58	+0.9
2,056,664	-				-0.9
2,056,763	+				-0.7
2,056,763	+				+0.3
2,056,764	-				-0.7
2,057,148	-		GFF5044	0.49	-0.9
2,057,174	+		GFF5044	0.52	-1.0
2,057,277	-		GFF5044	0.63	+1.1
2,057,277	-		GFF5044	0.63	-0.1
2,057,384	+		GFF5044	0.74	-0.1
2,057,384	+		GFF5044	0.74	+0.2
2,057,534	+				+1.3
2,057,643	-				+0.5
2,057,643	-				+0.1
2,057,643	-				-0.7
2,057,643	-				+1.5
2,057,644	+				+0.4
2,057,645	-				-0.7
2,057,645	-				-0.5
2,057,645	-				+0.1
2,057,646	+				-0.9
2,057,646	+				-1.1
2,057,647	-				-1.1
2,057,647	-				-0.1
2,057,977	-		GFF5045	0.33	+0.2
2,058,129	+		GFF5045	0.50	-0.9
2,058,130	-		GFF5045	0.50	+0.5
2,058,130	-		GFF5045	0.50	+0.3
2,058,333	+		GFF5045	0.72	+0.1
2,058,333	+		GFF5045	0.72	+0.3
2,058,333	+		GFF5045	0.72	+0.0
2,058,333	+		GFF5045	0.72	-0.2
2,058,334	-		GFF5045	0.72	+1.0
2,058,334	-		GFF5045	0.72	-0.0
2,058,427	-		GFF5045	0.83	+1.7