Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4940

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,956,742	+		GFF4939	0.28	+0.3
1,956,802	+		GFF4939	0.33	+0.0
1,956,802	+		GFF4939	0.33	-0.6
1,956,803	-		GFF4939	0.33	+0.2
1,956,803	-		GFF4939	0.33	-1.1
1,956,809	-		GFF4939	0.34	+0.2
1,956,809	-		GFF4939	0.34	+0.1
1,956,838	-		GFF4939	0.36	+0.3
1,957,207	+		GFF4939	0.66	-1.0
1,957,352	-		GFF4939	0.78	-0.6
1,957,957	+		GFF4940	0.16	+0.6
1,957,957	+		GFF4940	0.16	-1.2
1,957,958	-		GFF4940	0.16	-0.7
1,957,958	-		GFF4940	0.16	-0.6
1,958,287	+		GFF4940	0.33	+0.2
1,958,311	+		GFF4940	0.34	-0.5
1,959,682	-				-0.3
1,959,852	+		GFF4941	0.16	-2.1
1,959,853	-		GFF4941	0.16	-0.0