Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4703

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,654,695	-		GFF4702	0.16	+0.2
1,654,766	+		GFF4702	0.22	-0.1
1,654,766	+		GFF4702	0.22	+0.4
1,654,766	+		GFF4702	0.22	+0.1
1,654,766	+		GFF4702	0.22	-0.3
1,654,767	-		GFF4702	0.22	+0.3
1,654,946	+		GFF4702	0.38	-0.3
1,654,946	+		GFF4702	0.38	+0.2
1,654,946	+		GFF4702	0.38	+0.2
1,654,946	+		GFF4702	0.38	+0.6
1,654,946	+		GFF4702	0.38	-0.4
1,654,947	-		GFF4702	0.38	-0.1
1,654,947	-		GFF4702	0.38	-0.3
1,654,947	-		GFF4702	0.38	+0.1
1,654,947	-		GFF4702	0.38	-0.2
1,654,947	-		GFF4702	0.38	-0.7
1,654,947	-		GFF4702	0.38	-0.0
1,654,947	-		GFF4702	0.38	-0.1
1,654,947	-		GFF4702	0.38	-0.3
1,654,947	-		GFF4702	0.38	+0.1
1,654,947	-		GFF4702	0.38	+0.0
1,655,112	-		GFF4702	0.52	+1.1
1,655,112	-		GFF4702	0.52	-0.5
1,655,112	-		GFF4702	0.52	-0.2
1,655,237	+		GFF4702	0.63	-0.2
1,655,237	+		GFF4702	0.63	-0.0
1,655,238	-		GFF4702	0.63	-0.5
1,655,238	-		GFF4702	0.63	-0.0
1,655,238	-		GFF4702	0.63	+0.0
1,655,238	-		GFF4702	0.63	+0.2
1,655,828	+		GFF4703	0.13	+0.3
1,655,828	+		GFF4703	0.13	-0.5
1,655,828	+		GFF4703	0.13	+0.2
1,655,828	+		GFF4703	0.13	-1.1
1,655,867	+		GFF4703	0.16	-0.4
1,655,867	+		GFF4703	0.16	-0.3
1,655,867	+		GFF4703	0.16	-0.2
1,655,867	+		GFF4703	0.16	+0.3
1,655,867	+		GFF4703	0.16	+0.4
1,655,867	+		GFF4703	0.16	-0.3
1,655,867	+		GFF4703	0.16	-0.2
1,655,867	+		GFF4703	0.16	-0.9
1,655,868	-		GFF4703	0.16	+0.4
1,655,868	-		GFF4703	0.16	-0.1
1,655,868	-		GFF4703	0.16	-0.1
1,655,886	-		GFF4703	0.18	+0.9
1,655,957	+		GFF4703	0.24	+0.1
1,655,957	+		GFF4703	0.24	+0.2
1,655,957	+		GFF4703	0.24	+1.0
1,655,957	+		GFF4703	0.24	+0.1
1,655,958	-		GFF4703	0.24	-0.2
1,655,958	-		GFF4703	0.24	-0.0
1,655,958	-		GFF4703	0.24	+0.1
1,655,958	-		GFF4703	0.24	-0.3
1,655,958	-		GFF4703	0.24	-0.7
1,656,104	+		GFF4703	0.37	-1.0
1,656,104	+		GFF4703	0.37	-0.7
1,656,105	-		GFF4703	0.37	-0.9
1,656,105	-		GFF4703	0.37	+1.2
1,656,105	-		GFF4703	0.37	-0.2
1,656,105	-		GFF4703	0.37	+0.0
1,656,137	+		GFF4703	0.40	+0.6
1,656,137	+		GFF4703	0.40	+0.2
1,656,137	+		GFF4703	0.40	+1.8
1,656,137	+		GFF4703	0.40	-0.6
1,656,137	+		GFF4703	0.40	+0.4
1,656,138	-		GFF4703	0.40	-0.0
1,656,138	-		GFF4703	0.40	-0.6
1,656,138	-		GFF4703	0.40	-0.8
1,656,138	-		GFF4703	0.40	+0.7
1,656,138	-		GFF4703	0.40	+0.6
1,656,138	-		GFF4703	0.40	-0.0
1,656,264	-		GFF4703	0.51	+0.4
1,656,767	+				-0.1
1,656,767	+				+0.4
1,656,767	+				-0.1
1,656,767	+				-0.4
1,656,767	+				-0.2
1,656,767	+				-0.2
1,656,767	+				+1.3
1,656,768	-				+0.5
1,656,768	-				-1.5
1,656,768	-				+0.2
1,656,768	-				-0.8
1,656,768	-				-0.6
1,656,768	-				+0.1
1,656,768	-				-1.1
1,656,835	+				-2.0
1,656,835	+				-0.1
1,656,836	-				-2.5
1,656,955	+		GFF4704	0.21	+0.7
1,656,955	+		GFF4704	0.21	-0.4
1,656,955	+		GFF4704	0.21	+1.2
1,656,956	-		GFF4704	0.21	-0.0
1,657,144	+		GFF4704	0.45	-1.9
1,657,144	+		GFF4704	0.45	-0.1
1,657,144	+		GFF4704	0.45	+0.1
1,657,144	+		GFF4704	0.45	-0.8
1,657,144	+		GFF4704	0.45	-0.4
1,657,145	-		GFF4704	0.45	+1.2
1,657,145	-		GFF4704	0.45	+0.0
1,657,168	+		GFF4704	0.48	+0.3
1,657,168	+		GFF4704	0.48	-0.2
1,657,168	+		GFF4704	0.48	+0.2
1,657,169	-		GFF4704	0.48	+0.5
1,657,169	-		GFF4704	0.48	-0.0
1,657,169	-		GFF4704	0.48	+0.1
1,657,169	-		GFF4704	0.48	-0.3
1,657,605	+				+0.7
1,657,605	+				-0.6
1,657,605	+				-0.3
1,657,606	-				+0.3
1,657,606	-				+0.3
1,657,606	-				-0.4
1,657,606	-				+0.5
1,657,606	-				+0.1
1,657,606	-				-0.1
1,657,606	-				-1.4