Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4595

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,540,597	+		GFF4593	0.79	+0.2
1,540,641	+		GFF4593	0.82	-0.1
1,540,642	-		GFF4593	0.82	-0.3
1,540,716	+		GFF4593	0.89	+0.2
1,541,048	+		GFF4594	0.43	-0.8
1,541,049	-		GFF4594	0.43	+0.2
1,541,072	+		GFF4594	0.49	-0.3
1,541,073	-		GFF4594	0.49	-0.2
1,541,073	-		GFF4594	0.49	-0.4
1,541,129	+		GFF4594	0.62	+0.8
1,541,130	-		GFF4594	0.62	+1.7
1,541,343	+				-0.1
1,541,343	+				-0.3
1,541,344	-				-0.5
1,541,344	-				+0.2
1,541,344	-				+0.0
1,541,454	+				-0.4
1,541,454	+				+0.7
1,541,455	-				-0.1
1,541,455	-				-1.5
1,541,455	-				-0.5
1,541,455	-				+0.2
1,541,550	+		GFF4595	0.13	-0.3
1,541,550	+		GFF4595	0.13	-0.8
1,541,586	+		GFF4595	0.15	-0.4
1,541,586	+		GFF4595	0.15	-0.4
1,541,587	-		GFF4595	0.15	-0.8
1,541,587	-		GFF4595	0.15	-0.0
1,542,153	+		GFF4595	0.46	-0.4
1,542,153	+		GFF4595	0.46	+1.5
1,542,186	+		GFF4595	0.48	+1.1
1,542,186	+		GFF4595	0.48	-1.5
1,542,187	-		GFF4595	0.48	-2.0
1,542,309	+		GFF4595	0.55	+0.5
1,542,459	+		GFF4595	0.63	+0.1
1,542,648	+		GFF4595	0.73	+0.5
1,542,649	-		GFF4595	0.73	+0.1
1,542,920	+		GFF4595	0.88	-0.1
1,543,295	+		GFF4596	0.54	+0.5
1,543,295	+		GFF4596	0.54	+0.2
1,543,295	+		GFF4596	0.54	-0.0
1,543,296	-		GFF4596	0.54	-0.0
1,543,296	-		GFF4596	0.54	-0.1
1,543,296	-		GFF4596	0.54	-0.1
1,543,346	+		GFF4596	0.71	+0.1
1,543,346	+		GFF4596	0.71	+0.5
1,543,421	+				-0.8
1,543,422	-				-0.3
1,543,569	+				+0.9
1,543,569	+				+0.1
1,543,569	+				-0.7
1,543,569	+				+0.3
1,543,569	+				-0.2
1,543,570	-				-0.1
1,543,570	-				-0.5
1,543,570	-				-0.2
1,543,570	-				-0.6
1,543,570	-				-0.3
1,543,570	-				-1.7
1,543,570	-				-0.4
1,543,570	-				-1.4
1,543,570	-				+1.1
1,543,626	+		GFF4598	0.17	+0.1
1,543,626	+		GFF4598	0.17	-0.2
1,543,626	+		GFF4598	0.17	+0.0
1,543,627	-		GFF4598	0.18	-0.3
1,543,647	+		GFF4598	0.23	+0.9
1,543,647	+		GFF4598	0.23	-0.3
1,543,648	-		GFF4598	0.24	+0.4
1,543,648	-		GFF4598	0.24	+0.0
1,543,764	+		GFF4598	0.56	+0.2
1,543,795	-		GFF4598	0.64	-1.1
1,543,967	+				+0.8
1,543,967	+				+0.9
1,543,967	+				+0.4
1,543,968	-				+0.4
1,543,986	-				-0.1