Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4380

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,309,023	-		GFF4378	0.50	+0.0
1,309,023	-		GFF4378	0.50	-0.7
1,309,060	-		GFF4378	0.53	-0.6
1,309,469	+		GFF4378	0.88	-0.4
1,309,470	-		GFF4378	0.88	+0.7
1,309,484	+		GFF4378	0.89	+0.1
1,309,485	-		GFF4378	0.89	-0.3
1,309,556	+				-0.6
1,309,557	-				+0.3
1,309,557	-				+0.4
1,309,557	-				-0.0
1,309,557	-				+0.1
1,309,618	+				+0.2
1,309,619	-				-0.7
1,309,619	-				-1.4
1,309,619	-				-0.0
1,309,619	-				-0.3
1,309,662	-				+0.1
1,309,784	+		GFF4379	0.39	+0.1
1,309,785	-		GFF4379	0.39	+0.9
1,309,794	-		GFF4379	0.43	+0.4
1,309,828	+		GFF4379	0.55	+0.7
1,309,829	-		GFF4379	0.55	-0.0
1,310,162	-		GFF4380	0.39	-0.2
1,310,361	+		GFF4380	0.77	+0.8
1,310,361	+		GFF4380	0.77	-0.2
1,310,361	+		GFF4380	0.77	+0.8
1,310,361	+		GFF4380	0.77	-0.1
1,310,362	-		GFF4380	0.77	-0.3
1,310,363	+		GFF4380	0.78	-1.2
1,310,364	-		GFF4380	0.78	-1.0
1,310,364	-		GFF4380	0.78	-0.9
1,310,364	-		GFF4380	0.78	-0.9
1,310,437	+				-0.2
1,310,537	+		GFF4381	0.11	-0.1
1,310,538	-		GFF4381	0.11	+0.8
1,310,683	-		GFF4381	0.47	-0.8
1,310,818	+		GFF4381	0.81	-0.3
1,310,818	+		GFF4381	0.81	+0.4
1,310,818	+		GFF4381	0.81	+0.4
1,310,818	+		GFF4381	0.81	-0.3
1,310,819	-		GFF4381	0.81	-0.1
1,310,819	-		GFF4381	0.81	+0.5
1,310,819	-		GFF4381	0.81	+0.2
1,310,819	-		GFF4381	0.81	-0.7
1,310,819	-		GFF4381	0.81	-1.1
1,310,872	+				-0.5
1,310,873	-				-0.5
1,310,908	-				-0.2
1,310,923	-				-0.6
1,310,972	+				-0.1
1,310,972	+				-0.7
1,310,972	+				+0.1
1,310,972	+				-0.0
1,310,972	+				+0.2
1,310,973	-				+0.1
1,310,973	-				+0.2
1,310,973	-				-1.3
1,310,982	+				+0.3
1,311,058	+				+0.4
1,311,058	+				-0.5
1,311,094	+				+0.1
1,311,094	+				-1.0
1,311,094	+				+2.0
1,311,095	-				+0.3
1,311,095	-				+0.4
1,311,095	-				+1.2
1,311,101	+				+1.5
1,311,396	-				-0.0
1,311,442	+				-0.3
1,311,442	+				+0.2
1,311,471	-		GFF4382	0.13	-1.1