Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4370

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,298,644	+		GFF4368	0.65	-0.5
1,298,645	-		GFF4368	0.65	+0.9
1,298,677	+		GFF4368	0.67	-0.3
1,298,677	+		GFF4368	0.67	-0.4
1,298,677	+		GFF4368	0.67	+0.6
1,298,705	-		GFF4368	0.69	+0.1
1,298,707	+		GFF4368	0.69	-0.0
1,298,708	-		GFF4368	0.70	+0.9
1,298,708	-		GFF4368	0.70	+0.3
1,298,758	+		GFF4368	0.73	+0.5
1,298,759	-		GFF4368	0.73	+0.6
1,298,759	-		GFF4368	0.73	-0.9
1,298,803	+		GFF4368	0.76	-1.1
1,298,803	+		GFF4368	0.76	-0.4
1,298,830	+		GFF4368	0.78	-0.1
1,298,831	-		GFF4368	0.78	+1.2
1,298,851	+		GFF4368	0.80	-1.1
1,298,851	+		GFF4368	0.80	-0.3
1,298,852	-		GFF4368	0.80	-0.6
1,299,125	+				+0.3
1,299,126	-				+1.5
1,299,126	-				+1.1
1,299,126	-				+0.2
1,299,229	-				+0.1
1,299,383	+		GFF4369	0.69	+0.2
1,299,383	+		GFF4369	0.69	-0.7
1,299,383	+		GFF4369	0.69	+1.1
1,299,383	+		GFF4369	0.69	+0.0
1,299,383	+		GFF4369	0.69	+0.0
1,299,383	+		GFF4369	0.69	-0.8
1,299,383	+		GFF4369	0.69	-0.5
1,299,384	-		GFF4369	0.70	-0.4
1,299,384	-		GFF4369	0.70	+0.5
1,299,387	+		GFF4369	0.71	-1.7
1,299,387	+		GFF4369	0.71	+0.8
1,299,388	-		GFF4369	0.72	-0.1
1,299,388	-		GFF4369	0.72	-0.5
1,299,562	+				-0.1
1,299,562	+				-0.2
1,299,629	-		GFF4370	0.12	-0.1
1,299,923	+		GFF4370	0.31	+0.2
1,299,923	+		GFF4370	0.31	-0.5
1,300,256	-		GFF4370	0.53	-0.4
1,300,281	+		GFF4370	0.54	+0.1
1,300,281	+		GFF4370	0.54	+0.5
1,300,281	+		GFF4370	0.54	-0.1
1,300,282	-		GFF4370	0.54	-1.3
1,300,297	+		GFF4370	0.55	+0.5
1,300,298	-		GFF4370	0.55	+0.3
1,300,302	-		GFF4370	0.55	-0.6
1,300,329	-		GFF4370	0.57	-0.9
1,300,666	+		GFF4370	0.79	-0.2
1,300,883	+				-0.5
1,300,904	+				+0.2
1,300,904	+				+0.3
1,301,246	-		GFF4371	0.23	-1.2
1,301,246	-		GFF4371	0.23	+0.1
1,301,659	+		GFF4371	0.60	+0.2
1,301,659	+		GFF4371	0.60	-0.3
1,301,660	-		GFF4371	0.60	+0.5
1,301,840	+		GFF4371	0.77	-0.3
1,301,841	-		GFF4371	0.77	-0.3