Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4208

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,119,533	+				-0.2
1,119,533	+				-0.5
1,119,534	-				-0.0
1,119,534	-				+0.6
1,119,604	+				+0.5
1,119,604	+				-0.1
1,119,605	-				+0.4
1,119,605	-				+2.3
1,119,648	-				+1.0
1,119,648	-				-1.0
1,119,679	+				+0.3
1,119,679	+				-0.5
1,119,680	-				-0.1
1,119,680	-				-0.2
1,119,680	-				-0.6
1,119,680	-				+0.4
1,119,868	+		GFF4207	0.29	+0.6
1,119,868	+		GFF4207	0.29	+0.9
1,119,868	+		GFF4207	0.29	+0.1
1,119,868	+		GFF4207	0.29	+0.5
1,119,868	+		GFF4207	0.29	-0.0
1,119,868	+		GFF4207	0.29	+0.4
1,119,868	+		GFF4207	0.29	+0.4
1,119,868	+		GFF4207	0.29	-0.2
1,119,868	+		GFF4207	0.29	-0.2
1,119,868	+		GFF4207	0.29	-0.2
1,119,868	+		GFF4207	0.29	+1.2
1,119,869	-		GFF4207	0.29	+0.1
1,119,869	-		GFF4207	0.29	-0.7
1,119,869	-		GFF4207	0.29	+0.4
1,119,869	-		GFF4207	0.29	-0.0
1,119,869	-		GFF4207	0.29	+1.5
1,119,869	-		GFF4207	0.29	-0.2
1,119,869	-		GFF4207	0.29	-0.1
1,120,393	+				+0.1
1,120,393	+				+1.0
1,120,393	+				+0.5
1,120,393	+				+0.1
1,120,393	+				+1.2
1,120,393	+				+0.6
1,120,394	-				+0.1
1,120,394	-				+1.3
1,120,394	-				+0.3
1,120,394	-				-0.5
1,120,394	-				+0.4
1,120,394	-				+0.2
1,120,758	+		GFF4208	0.28	+0.4
1,120,758	+		GFF4208	0.28	+0.2
1,120,758	+		GFF4208	0.28	+0.6
1,120,758	+		GFF4208	0.28	+0.2
1,120,758	+		GFF4208	0.28	-0.1
1,120,759	-		GFF4208	0.28	+0.1
1,120,893	+		GFF4208	0.40	-0.3
1,120,893	+		GFF4208	0.40	+1.0
1,120,894	-		GFF4208	0.40	+0.2
1,120,894	-		GFF4208	0.40	+0.3
1,120,894	-		GFF4208	0.40	+0.1
1,120,905	+		GFF4208	0.41	+0.1
1,120,905	+		GFF4208	0.41	+0.4
1,120,905	+		GFF4208	0.41	-0.2
1,120,905	+		GFF4208	0.41	+0.3
1,120,905	+		GFF4208	0.41	+0.8
1,120,906	-		GFF4208	0.41	+0.8
1,120,906	-		GFF4208	0.41	+1.3
1,120,906	-		GFF4208	0.41	+0.2
1,120,906	-		GFF4208	0.41	+0.5
1,120,906	-		GFF4208	0.41	+1.6
1,120,908	+		GFF4208	0.41	+1.6
1,120,908	+		GFF4208	0.41	+0.5
1,121,451	+				-1.3
1,121,452	-				-0.7
1,121,674	+		GFF4209	0.16	+0.9
1,122,119	+		GFF4209	0.74	-0.5
1,122,119	+		GFF4209	0.74	-0.7
1,122,119	+		GFF4209	0.74	+0.9
1,122,119	+		GFF4209	0.74	+0.3
1,122,119	+		GFF4209	0.74	+0.3
1,122,119	+		GFF4209	0.74	+0.1
1,122,119	+		GFF4209	0.74	-0.7
1,122,120	-		GFF4209	0.74	-0.4
1,122,120	-		GFF4209	0.74	+0.1
1,122,120	-		GFF4209	0.74	-0.7
1,122,120	-		GFF4209	0.74	+0.0
1,122,120	-		GFF4209	0.74	-0.2
1,122,120	-		GFF4209	0.74	+0.4
1,122,120	-		GFF4209	0.74	-0.0
1,122,120	-		GFF4209	0.74	+1.2
1,122,120	-		GFF4209	0.74	+0.2
1,122,120	-		GFF4209	0.74	-0.4
1,122,272	+				+0.2
1,122,272	+				-0.2
1,122,272	+				-0.1
1,122,272	+				+0.6
1,122,273	-				+0.2
1,122,273	-				+0.8
1,122,290	+				-0.1
1,122,290	+				+0.1
1,122,290	+				+0.0
1,122,291	-				+0.0
1,122,320	+				-0.1
1,122,503	+		GFF4210	0.15	+0.5
1,122,503	+		GFF4210	0.15	-0.8
1,122,503	+		GFF4210	0.15	+0.2
1,122,503	+		GFF4210	0.15	-0.4
1,122,503	+		GFF4210	0.15	+0.1
1,122,503	+		GFF4210	0.15	-0.2
1,122,504	-		GFF4210	0.15	-0.3
1,122,504	-		GFF4210	0.15	+0.3
1,122,504	-		GFF4210	0.15	+0.1
1,122,504	-		GFF4210	0.15	+0.5
1,122,504	-		GFF4210	0.15	-0.2
1,122,504	-		GFF4210	0.15	-0.7
1,122,504	-		GFF4210	0.15	+0.1
1,122,504	-		GFF4210	0.15	+1.1
1,122,504	-		GFF4210	0.15	+0.0
1,122,507	-		GFF4210	0.16	+0.0
1,122,507	-		GFF4210	0.16	-0.5
1,122,507	-		GFF4210	0.16	+0.2