Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF41

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF39 and GFF40 are separated by 19 nucleotidesGFF40 and GFF41 are separated by 184 nucleotidesGFF41 and GFF42 overlap by 24 nucleotides GFF39 - hypothetical protein, at 39,775 to 40,536 GFF39 GFF40 - hypothetical protein, at 40,556 to 41,203 GFF40 GFF41 - hypothetical protein, at 41,388 to 42,263 GFF41 GFF42 - glycosyl transferase group 1, at 42,240 to 43,385 GFF42 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1at 40.932 kb on + strand, within GFF40at 40.959 kb on + strand, within GFF40at 40.960 kb on - strand, within GFF40at 41.034 kb on + strand, within GFF40at 41.034 kb on + strand, within GFF40at 41.281 kb on - strandat 41.281 kb on - strandat 41.296 kb on - strandat 41.701 kb on - strand, within GFF41at 41.937 kb on + strand, within GFF41at 41.938 kb on - strand, within GFF41at 42.762 kb on + strand, within GFF42at 43.037 kb on - strand, within GFF42at 43.037 kb on - strand, within GFF42

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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40,932 + GFF40 0.58 -0.2
40,959 + GFF40 0.62 -0.2
40,960 - GFF40 0.62 -0.4
41,034 + GFF40 0.74 -0.2
41,034 + GFF40 0.74 -0.0
41,281 - +0.5
41,281 - +0.7
41,296 - -0.7
41,701 - GFF41 0.36 -0.6
41,937 + GFF41 0.63 +0.2
41,938 - GFF41 0.63 +0.0
42,762 + GFF42 0.46 -1.2
43,037 - GFF42 0.70 -0.2
43,037 - GFF42 0.70 -0.2

Or see this region's nucleotide sequence