Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4071 and GFF4072 are separated by 70 nucleotides GFF4072 and GFF4073 are separated by 41 nucleotides GFF4073 and GFF4074 are separated by 2 nucleotides GFF4074 and GFF4075 are separated by 13 nucleotides
GFF4071 - Flagellar basal-body P-ring formation protein FlgA, at 985,915 to 986,535
GFF4071
GFF4072 - Flagellar basal-body rod protein FlgB, at 986,606 to 986,968
GFF4072
GFF4073 - Flagellar basal-body rod protein FlgC, at 987,010 to 987,390
GFF4073
GFF4074 - Flagellar basal-body rod modification protein FlgD, at 987,393 to 988,061
GFF4074
GFF4075 - Flagellar hook protein FlgE, at 988,075 to 989,268
GFF4075
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1 at 986.638 kb on - strand at 986.814 kb on - strand, within GFF4072 at 986.845 kb on + strand, within GFF4072 at 986.966 kb on + strand at 986.967 kb on - strand at 986.967 kb on - strand at 986.967 kb on - strand at 987.095 kb on - strand, within GFF4073 at 987.127 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.256 kb on + strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.257 kb on - strand, within GFF4073 at 987.805 kb on + strand, within GFF4074 at 987.806 kb on - strand, within GFF4074 at 987.883 kb on - strand, within GFF4074 at 988.064 kb on - strand at 988.162 kb on + strand at 988.163 kb on - strand at 988.164 kb on - strand at 988.202 kb on - strand, within GFF4075 at 988.202 kb on - strand, within GFF4075 at 988.393 kb on + strand, within GFF4075 at 988.393 kb on + strand, within GFF4075 at 988.429 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.526 kb on - strand, within GFF4075 at 988.598 kb on - strand, within GFF4075 at 988.660 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.847 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 986,638 - -0.3 986,814 - GFF4072 0.57 -0.6 986,845 + GFF4072 0.66 -0.1 986,966 + -2.2 986,967 - -1.3 986,967 - +0.5 986,967 - -0.2 987,095 - GFF4073 0.22 +0.2 987,127 + GFF4073 0.31 +0.1 987,256 + GFF4073 0.65 +0.2 987,256 + GFF4073 0.65 +0.8 987,256 + GFF4073 0.65 -0.1 987,256 + GFF4073 0.65 -0.3 987,257 - GFF4073 0.65 +0.5 987,257 - GFF4073 0.65 -0.9 987,257 - GFF4073 0.65 +0.2 987,257 - GFF4073 0.65 -0.4 987,257 - GFF4073 0.65 +0.2 987,805 + GFF4074 0.62 +0.3 987,806 - GFF4074 0.62 +0.6 987,883 - GFF4074 0.73 +0.7 988,064 - +0.2 988,162 + -0.6 988,163 - -1.9 988,164 - -0.1 988,202 - GFF4075 0.11 +0.3 988,202 - GFF4075 0.11 -0.0 988,393 + GFF4075 0.27 -0.1 988,393 + GFF4075 0.27 -0.4 988,429 + GFF4075 0.30 -0.4 988,525 + GFF4075 0.38 -0.0 988,525 + GFF4075 0.38 +0.6 988,526 - GFF4075 0.38 +0.2 988,598 - GFF4075 0.44 +0.6 988,660 + GFF4075 0.49 -0.4 988,699 + GFF4075 0.52 -0.4 988,699 + GFF4075 0.52 +0.0 988,699 + GFF4075 0.52 -0.2 988,700 - GFF4075 0.52 +0.2 988,700 - GFF4075 0.52 -0.1 988,846 + GFF4075 0.65 -1.3 988,846 + GFF4075 0.65 -0.3 988,847 - GFF4075 0.65 -0.4 988,967 - GFF4075 0.75 +0.7 988,967 - GFF4075 0.75 -0.2
Or see this region's nucleotide sequence