Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4036 and GFF4037 are separated by 121 nucleotides GFF4037 and GFF4038 are separated by 103 nucleotides
GFF4036 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 953,594 to 954,883
GFF4036
GFF4037 - TRAP transporter solute receptor, TAXI family precursor, at 955,005 to 955,982
GFF4037
GFF4038 - TRAP-type uncharacterized transport system, fused permease component, at 956,086 to 958,668
GFF4038
Position (kb) 955
956 Strain fitness (log2 ratio) -1
0
1 at 954.095 kb on + strand, within GFF4036 at 954.222 kb on - strand, within GFF4036 at 954.467 kb on + strand, within GFF4036 at 954.746 kb on + strand, within GFF4036 at 955.128 kb on + strand, within GFF4037 at 955.128 kb on + strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.131 kb on + strand, within GFF4037 at 955.131 kb on + strand, within GFF4037 at 955.332 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.594 kb on - strand, within GFF4037 at 955.707 kb on + strand, within GFF4037 at 955.708 kb on - strand, within GFF4037 at 955.768 kb on - strand, within GFF4037 at 955.821 kb on + strand, within GFF4037 at 955.822 kb on - strand, within GFF4037 at 955.822 kb on - strand, within GFF4037 at 955.957 kb on - strand at 955.957 kb on - strand at 956.221 kb on + strand at 956.221 kb on + strand at 956.222 kb on - strand at 956.222 kb on - strand at 956.227 kb on + strand at 956.228 kb on - strand at 956.413 kb on + strand, within GFF4038 at 956.413 kb on + strand, within GFF4038 at 956.413 kb on + strand, within GFF4038 at 956.413 kb on + strand, within GFF4038 at 956.414 kb on - strand, within GFF4038 at 956.414 kb on - strand, within GFF4038 at 956.414 kb on - strand, within GFF4038 at 956.414 kb on - strand, within GFF4038 at 956.414 kb on - strand, within GFF4038 at 956.428 kb on + strand, within GFF4038 at 956.428 kb on + strand, within GFF4038 at 956.429 kb on - strand, within GFF4038 at 956.429 kb on - strand, within GFF4038 at 956.668 kb on + strand, within GFF4038 at 956.669 kb on - strand, within GFF4038 at 956.688 kb on - strand, within GFF4038 at 956.710 kb on + strand, within GFF4038 at 956.711 kb on - strand, within GFF4038 at 956.711 kb on - strand, within GFF4038 at 956.755 kb on + strand, within GFF4038 at 956.755 kb on + strand, within GFF4038 at 956.756 kb on - strand, within GFF4038 at 956.756 kb on - strand, within GFF4038 at 956.756 kb on - strand, within GFF4038
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 954,095 + GFF4036 0.39 -0.4 954,222 - GFF4036 0.49 -1.3 954,467 + GFF4036 0.68 +0.2 954,746 + GFF4036 0.89 -0.0 955,128 + GFF4037 0.13 +0.2 955,128 + GFF4037 0.13 -0.2 955,129 - GFF4037 0.13 +0.0 955,129 - GFF4037 0.13 +0.1 955,129 - GFF4037 0.13 +0.2 955,129 - GFF4037 0.13 -0.7 955,129 - GFF4037 0.13 +0.3 955,129 - GFF4037 0.13 -0.2 955,129 - GFF4037 0.13 -0.4 955,129 - GFF4037 0.13 +0.2 955,131 + GFF4037 0.13 -0.2 955,131 + GFF4037 0.13 +0.5 955,332 + GFF4037 0.33 +0.2 955,590 + GFF4037 0.60 -0.0 955,590 + GFF4037 0.60 +0.1 955,590 + GFF4037 0.60 -0.4 955,590 + GFF4037 0.60 -0.0 955,591 - GFF4037 0.60 -0.4 955,591 - GFF4037 0.60 +0.1 955,591 - GFF4037 0.60 -0.2 955,594 - GFF4037 0.60 -0.1 955,707 + GFF4037 0.72 +0.1 955,708 - GFF4037 0.72 -0.0 955,768 - GFF4037 0.78 +0.2 955,821 + GFF4037 0.83 +0.4 955,822 - GFF4037 0.84 +0.6 955,822 - GFF4037 0.84 -0.1 955,957 - -0.2 955,957 - +0.6 956,221 + -0.0 956,221 + -0.4 956,222 - -0.0 956,222 - +0.7 956,227 + -0.3 956,228 - +0.1 956,413 + GFF4038 0.13 -0.2 956,413 + GFF4038 0.13 +0.3 956,413 + GFF4038 0.13 -0.3 956,413 + GFF4038 0.13 +0.3 956,414 - GFF4038 0.13 -1.1 956,414 - GFF4038 0.13 +0.1 956,414 - GFF4038 0.13 +0.5 956,414 - GFF4038 0.13 -0.0 956,414 - GFF4038 0.13 -0.2 956,428 + GFF4038 0.13 -0.1 956,428 + GFF4038 0.13 -0.8 956,429 - GFF4038 0.13 +0.2 956,429 - GFF4038 0.13 -0.4 956,668 + GFF4038 0.23 -0.3 956,669 - GFF4038 0.23 +0.2 956,688 - GFF4038 0.23 -0.5 956,710 + GFF4038 0.24 +0.1 956,711 - GFF4038 0.24 +0.0 956,711 - GFF4038 0.24 -0.1 956,755 + GFF4038 0.26 -0.7 956,755 + GFF4038 0.26 +0.2 956,756 - GFF4038 0.26 +0.3 956,756 - GFF4038 0.26 -0.5 956,756 - GFF4038 0.26 -1.1
Or see this region's nucleotide sequence