Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3996 and GFF3997 overlap by 4 nucleotides GFF3997 and GFF3998 overlap by 4 nucleotides GFF3998 and GFF3999 are separated by 1 nucleotides
GFF3996 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 911,993 to 912,949
GFF3996
GFF3997 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 912,946 to 913,935
GFF3997
GFF3998 - Cobyric acid synthase (EC 6.3.5.10), at 913,932 to 915,383
GFF3998
GFF3999 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 915,385 to 916,431
GFF3999
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -1
0
1 at 913.099 kb on + strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.100 kb on - strand, within GFF3997 at 913.249 kb on + strand, within GFF3997 at 913.418 kb on - strand, within GFF3997 at 913.418 kb on - strand, within GFF3997 at 913.532 kb on - strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 913.756 kb on + strand, within GFF3997 at 914.013 kb on + strand at 914.013 kb on + strand at 914.014 kb on - strand at 914.109 kb on + strand, within GFF3998 at 914.457 kb on + strand, within GFF3998 at 915.112 kb on - strand, within GFF3998
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 913,099 + GFF3997 0.15 -0.3 913,100 - GFF3997 0.16 +0.1 913,100 - GFF3997 0.16 +0.3 913,100 - GFF3997 0.16 +0.2 913,249 + GFF3997 0.31 -0.4 913,418 - GFF3997 0.48 +0.9 913,418 - GFF3997 0.48 -0.8 913,532 - GFF3997 0.59 +0.1 913,756 + GFF3997 0.82 +0.1 913,756 + GFF3997 0.82 +0.1 913,756 + GFF3997 0.82 +0.4 914,013 + +0.2 914,013 + -0.2 914,014 - -0.9 914,109 + GFF3998 0.12 +1.0 914,457 + GFF3998 0.36 -0.2 915,112 - GFF3998 0.81 +1.2
Or see this region's nucleotide sequence