Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3840

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3839 and GFF3840 are separated by 12 nucleotidesGFF3840 and GFF3841 are separated by 55 nucleotides GFF3839 - RND efflux system, membrane fusion protein CmeA, at 746,973 to 748,160 GFF3839 GFF3840 - RND efflux system, inner membrane transporter CmeB, at 748,173 to 751,337 GFF3840 GFF3841 - RND efflux system, outer membrane lipoprotein CmeC, at 751,393 to 752,883 GFF3841 Position (kb) 748 749 750 751 752Strain fitness (log2 ratio) -2 -1 0 1at 747.252 kb on + strand, within GFF3839at 747.252 kb on + strand, within GFF3839at 747.253 kb on - strand, within GFF3839at 747.378 kb on + strand, within GFF3839at 747.378 kb on + strand, within GFF3839at 747.468 kb on + strand, within GFF3839at 747.469 kb on - strand, within GFF3839at 747.588 kb on + strand, within GFF3839at 747.588 kb on + strand, within GFF3839at 747.588 kb on + strand, within GFF3839at 747.589 kb on - strand, within GFF3839at 747.589 kb on - strand, within GFF3839at 747.589 kb on - strand, within GFF3839at 747.828 kb on + strand, within GFF3839at 747.828 kb on + strand, within GFF3839at 747.829 kb on - strand, within GFF3839at 747.829 kb on - strand, within GFF3839at 748.158 kb on + strandat 748.158 kb on + strandat 748.158 kb on + strandat 748.158 kb on + strandat 748.159 kb on - strandat 748.275 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.401 kb on + strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.402 kb on - strandat 748.642 kb on - strand, within GFF3840at 748.995 kb on + strand, within GFF3840at 748.995 kb on + strand, within GFF3840at 748.995 kb on + strand, within GFF3840at 748.996 kb on - strand, within GFF3840at 748.996 kb on - strand, within GFF3840at 748.996 kb on - strand, within GFF3840at 748.996 kb on - strand, within GFF3840at 748.996 kb on - strand, within GFF3840at 749.151 kb on + strand, within GFF3840at 749.262 kb on + strand, within GFF3840at 749.382 kb on - strand, within GFF3840at 749.571 kb on + strand, within GFF3840at 749.571 kb on + strand, within GFF3840at 749.572 kb on - strand, within GFF3840at 749.572 kb on - strand, within GFF3840at 749.802 kb on + strand, within GFF3840at 749.802 kb on + strand, within GFF3840at 749.803 kb on - strand, within GFF3840at 749.803 kb on - strand, within GFF3840at 749.835 kb on + strand, within GFF3840at 749.835 kb on + strand, within GFF3840at 749.835 kb on + strand, within GFF3840at 749.836 kb on - strand, within GFF3840at 749.836 kb on - strand, within GFF3840at 749.836 kb on - strand, within GFF3840at 749.836 kb on - strand, within GFF3840at 750.153 kb on + strand, within GFF3840at 750.154 kb on - strand, within GFF3840at 750.432 kb on + strand, within GFF3840at 750.432 kb on + strand, within GFF3840at 750.432 kb on + strand, within GFF3840at 750.432 kb on + strand, within GFF3840at 750.433 kb on - strand, within GFF3840at 750.433 kb on - strand, within GFF3840at 750.433 kb on - strand, within GFF3840at 750.615 kb on + strand, within GFF3840at 750.615 kb on + strand, within GFF3840at 750.790 kb on - strand, within GFF3840at 750.834 kb on + strand, within GFF3840at 750.834 kb on + strand, within GFF3840at 750.834 kb on + strand, within GFF3840at 750.835 kb on - strand, within GFF3840at 750.921 kb on + strand, within GFF3840at 750.921 kb on + strand, within GFF3840at 750.936 kb on + strand, within GFF3840at 750.936 kb on + strand, within GFF3840at 750.936 kb on + strand, within GFF3840at 750.936 kb on + strand, within GFF3840at 750.937 kb on - strand, within GFF3840at 750.937 kb on - strand, within GFF3840at 751.341 kb on + strandat 751.341 kb on + strandat 751.342 kb on - strandat 751.342 kb on - strandat 751.342 kb on - strandat 751.513 kb on + strandat 751.513 kb on + strandat 751.513 kb on + strandat 751.513 kb on + strandat 751.514 kb on - strandat 751.514 kb on - strandat 751.514 kb on - strandat 751.714 kb on + strand, within GFF3841at 751.715 kb on - strand, within GFF3841at 751.808 kb on - strand, within GFF3841at 751.808 kb on - strand, within GFF3841at 751.808 kb on - strand, within GFF3841at 751.891 kb on + strand, within GFF3841at 751.891 kb on + strand, within GFF3841at 751.892 kb on - strand, within GFF3841at 751.892 kb on - strand, within GFF3841

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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747,252 + GFF3839 0.23 -0.1
747,252 + GFF3839 0.23 -0.5
747,253 - GFF3839 0.24 +0.5
747,378 + GFF3839 0.34 +0.8
747,378 + GFF3839 0.34 -1.4
747,468 + GFF3839 0.42 +0.5
747,469 - GFF3839 0.42 -0.1
747,588 + GFF3839 0.52 +0.1
747,588 + GFF3839 0.52 -0.3
747,588 + GFF3839 0.52 +1.1
747,589 - GFF3839 0.52 +0.1
747,589 - GFF3839 0.52 -0.2
747,589 - GFF3839 0.52 +1.5
747,828 + GFF3839 0.72 -0.4
747,828 + GFF3839 0.72 -0.9
747,829 - GFF3839 0.72 -1.3
747,829 - GFF3839 0.72 -0.1
748,158 + +0.3
748,158 + +0.6
748,158 + -0.6
748,158 + +0.2
748,159 - +0.0
748,275 + +0.2
748,401 + -0.1
748,401 + +0.3
748,401 + +1.3
748,401 + -0.7
748,401 + -0.2
748,401 + +0.1
748,401 + -0.6
748,402 - -0.0
748,402 - -0.4
748,402 - -1.4
748,402 - -0.7
748,402 - -0.4
748,402 - +0.1
748,402 - -0.1
748,642 - GFF3840 0.15 -0.1
748,995 + GFF3840 0.26 +0.6
748,995 + GFF3840 0.26 -0.1
748,995 + GFF3840 0.26 -1.1
748,996 - GFF3840 0.26 +0.3
748,996 - GFF3840 0.26 +0.0
748,996 - GFF3840 0.26 +0.4
748,996 - GFF3840 0.26 -0.5
748,996 - GFF3840 0.26 +0.8
749,151 + GFF3840 0.31 +0.1
749,262 + GFF3840 0.34 -0.0
749,382 - GFF3840 0.38 -0.2
749,571 + GFF3840 0.44 +0.4
749,571 + GFF3840 0.44 +0.1
749,572 - GFF3840 0.44 -2.1
749,572 - GFF3840 0.44 +0.2
749,802 + GFF3840 0.51 +0.1
749,802 + GFF3840 0.51 -0.5
749,803 - GFF3840 0.52 +0.0
749,803 - GFF3840 0.52 +0.0
749,835 + GFF3840 0.53 -0.2
749,835 + GFF3840 0.53 -0.4
749,835 + GFF3840 0.53 +0.9
749,836 - GFF3840 0.53 -0.2
749,836 - GFF3840 0.53 -0.1
749,836 - GFF3840 0.53 -0.4
749,836 - GFF3840 0.53 +1.4
750,153 + GFF3840 0.63 +0.1
750,154 - GFF3840 0.63 -1.3
750,432 + GFF3840 0.71 -0.4
750,432 + GFF3840 0.71 -0.3
750,432 + GFF3840 0.71 +0.1
750,432 + GFF3840 0.71 +0.3
750,433 - GFF3840 0.71 -0.2
750,433 - GFF3840 0.71 -0.8
750,433 - GFF3840 0.71 -1.5
750,615 + GFF3840 0.77 +0.2
750,615 + GFF3840 0.77 -1.2
750,790 - GFF3840 0.83 +0.2
750,834 + GFF3840 0.84 -1.0
750,834 + GFF3840 0.84 -0.0
750,834 + GFF3840 0.84 +0.6
750,835 - GFF3840 0.84 -0.5
750,921 + GFF3840 0.87 -0.4
750,921 + GFF3840 0.87 +0.2
750,936 + GFF3840 0.87 +0.6
750,936 + GFF3840 0.87 -0.4
750,936 + GFF3840 0.87 -0.4
750,936 + GFF3840 0.87 +0.1
750,937 - GFF3840 0.87 -0.6
750,937 - GFF3840 0.87 -1.1
751,341 + +0.3
751,341 + -0.4
751,342 - +0.2
751,342 - +0.1
751,342 - +0.2
751,513 + +0.2
751,513 + -0.7
751,513 + -0.5
751,513 + -2.2
751,514 - -0.4
751,514 - +0.2
751,514 - -0.8
751,714 + GFF3841 0.22 +1.1
751,715 - GFF3841 0.22 -0.0
751,808 - GFF3841 0.28 -0.3
751,808 - GFF3841 0.28 -0.4
751,808 - GFF3841 0.28 -0.7
751,891 + GFF3841 0.33 +0.2
751,891 + GFF3841 0.33 +0.9
751,892 - GFF3841 0.33 +0.2
751,892 - GFF3841 0.33 -2.5

Or see this region's nucleotide sequence