Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3780 and GFF3781 are separated by 5 nucleotides GFF3781 and GFF3782 are separated by 23 nucleotides GFF3782 and GFF3783 are separated by 12 nucleotides
GFF3780 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 678,434 to 678,853
GFF3780
GFF3781 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 678,859 to 679,623
GFF3781
GFF3782 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 679,647 to 680,894
GFF3782
GFF3783 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 680,907 to 682,775
GFF3783
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1 at 679.145 kb on + strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.271 kb on + strand, within GFF3781 at 679.272 kb on - strand, within GFF3781 at 679.623 kb on + strand at 679.624 kb on - strand at 679.717 kb on + strand at 680.152 kb on + strand, within GFF3782 at 680.362 kb on + strand, within GFF3782 at 680.437 kb on + strand, within GFF3782 at 680.437 kb on + strand, within GFF3782 at 680.438 kb on - strand, within GFF3782 at 680.819 kb on - strand at 681.598 kb on + strand, within GFF3783 at 681.599 kb on - strand, within GFF3783 at 681.725 kb on - strand, within GFF3783 at 681.824 kb on - strand, within GFF3783 at 681.824 kb on - strand, within GFF3783
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 679,145 + GFF3781 0.37 -0.8 679,146 - GFF3781 0.38 +0.1 679,146 - GFF3781 0.38 +0.0 679,146 - GFF3781 0.38 +0.5 679,271 + GFF3781 0.54 -1.0 679,272 - GFF3781 0.54 +0.3 679,623 + +0.7 679,624 - +0.2 679,717 + -0.0 680,152 + GFF3782 0.40 -0.3 680,362 + GFF3782 0.57 +0.7 680,437 + GFF3782 0.63 -0.1 680,437 + GFF3782 0.63 -0.3 680,438 - GFF3782 0.63 -0.5 680,819 - +0.0 681,598 + GFF3783 0.37 +0.3 681,599 - GFF3783 0.37 +0.2 681,725 - GFF3783 0.44 +0.1 681,824 - GFF3783 0.49 +1.0 681,824 - GFF3783 0.49 +0.3
Or see this region's nucleotide sequence