Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3756 and GFF3757 are separated by 104 nucleotides GFF3757 and GFF3758 are separated by 13 nucleotides GFF3758 and GFF3759 are separated by 78 nucleotides
GFF3756 - Membrane fusion component of tripartite multidrug resistance system, at 650,115 to 651,410
GFF3756
GFF3757 - Inner membrane component of tripartite multidrug resistance system, at 651,515 to 653,044
GFF3757
GFF3758 - SAM-dependent methyltransferases, at 653,058 to 653,720
GFF3758
GFF3759 - PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene, at 653,799 to 654,143
GFF3759
Position (kb) 651
652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.772 kb on + strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.773 kb on - strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.817 kb on + strand, within GFF3756 at 650.980 kb on - strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 650.997 kb on + strand, within GFF3756 at 651.900 kb on - strand, within GFF3757 at 652.022 kb on + strand, within GFF3757 at 652.022 kb on + strand, within GFF3757 at 652.023 kb on - strand, within GFF3757 at 652.074 kb on - strand, within GFF3757 at 652.349 kb on + strand, within GFF3757 at 652.350 kb on - strand, within GFF3757 at 652.922 kb on + strand at 653.023 kb on - strand at 653.089 kb on + strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.090 kb on - strand at 653.272 kb on + strand, within GFF3758 at 653.273 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.360 kb on - strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.635 kb on + strand, within GFF3758 at 653.636 kb on - strand, within GFF3758 at 653.752 kb on - strand at 653.874 kb on + strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 653.875 kb on - strand, within GFF3759 at 654.023 kb on - strand, within GFF3759
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 650,772 + GFF3756 0.51 +0.5 650,772 + GFF3756 0.51 -0.7 650,772 + GFF3756 0.51 -0.1 650,773 - GFF3756 0.51 -0.3 650,773 - GFF3756 0.51 -0.6 650,773 - GFF3756 0.51 -0.4 650,817 + GFF3756 0.54 -0.7 650,817 + GFF3756 0.54 -0.4 650,980 - GFF3756 0.67 +0.2 650,997 + GFF3756 0.68 -0.2 650,997 + GFF3756 0.68 -0.1 650,997 + GFF3756 0.68 -0.9 651,900 - GFF3757 0.25 +0.7 652,022 + GFF3757 0.33 -0.0 652,022 + GFF3757 0.33 -0.5 652,023 - GFF3757 0.33 +0.3 652,074 - GFF3757 0.37 +0.6 652,349 + GFF3757 0.55 -1.8 652,350 - GFF3757 0.55 +1.1 652,922 + -0.7 653,023 - +0.8 653,089 + -0.2 653,090 - -0.2 653,090 - -0.0 653,090 - -0.7 653,090 - -1.7 653,272 + GFF3758 0.32 -0.3 653,273 - GFF3758 0.32 +0.0 653,360 - GFF3758 0.46 -0.7 653,360 - GFF3758 0.46 -0.4 653,635 + GFF3758 0.87 -0.1 653,635 + GFF3758 0.87 +0.2 653,636 - GFF3758 0.87 -0.1 653,752 - +0.3 653,874 + GFF3759 0.22 +0.4 653,875 - GFF3759 0.22 +0.2 653,875 - GFF3759 0.22 +0.5 654,023 - GFF3759 0.65 +0.5
Or see this region's nucleotide sequence