Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5787 and GFF3681 are separated by 51 nucleotides GFF3681 and GFF3682 are separated by 34 nucleotides GFF3682 and GFF3683 are separated by 54 nucleotides GFF3683 and GFF3684 are separated by 1 nucleotides
GFF5787 - tRNA-Leu-GAG, at 571,409 to 571,490
GFF5787
GFF3681 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 571,542 to 571,901
GFF3681
GFF3682 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 571,936 to 572,415
GFF3682
GFF3683 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3), at 572,470 to 573,093
GFF3683
GFF3684 - NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 573,095 to 574,348
GFF3684
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 571.534 kb on + strand at 571.534 kb on + strand at 571.668 kb on + strand, within GFF3681 at 571.867 kb on - strand at 571.949 kb on + strand at 571.950 kb on - strand at 572.080 kb on + strand, within GFF3682 at 572.261 kb on - strand, within GFF3682 at 572.272 kb on + strand, within GFF3682 at 572.317 kb on + strand, within GFF3682 at 572.317 kb on + strand, within GFF3682 at 572.318 kb on - strand, within GFF3682 at 572.318 kb on - strand, within GFF3682 at 572.357 kb on - strand, within GFF3682 at 572.609 kb on - strand, within GFF3683 at 572.875 kb on + strand, within GFF3683 at 572.876 kb on - strand, within GFF3683 at 573.076 kb on + strand at 573.113 kb on + strand at 573.261 kb on - strand, within GFF3684 at 573.479 kb on + strand, within GFF3684 at 573.602 kb on + strand, within GFF3684 at 573.722 kb on + strand, within GFF3684 at 573.873 kb on - strand, within GFF3684 at 573.881 kb on + strand, within GFF3684
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 571,534 + -0.2 571,534 + -1.7 571,668 + GFF3681 0.35 -1.9 571,867 - -1.5 571,949 + +0.2 571,950 - +0.1 572,080 + GFF3682 0.30 -2.3 572,261 - GFF3682 0.68 -2.1 572,272 + GFF3682 0.70 -1.1 572,317 + GFF3682 0.79 -1.7 572,317 + GFF3682 0.79 -0.7 572,318 - GFF3682 0.80 +0.5 572,318 - GFF3682 0.80 -2.4 572,357 - GFF3682 0.88 -1.7 572,609 - GFF3683 0.22 -0.9 572,875 + GFF3683 0.65 -0.9 572,876 - GFF3683 0.65 -0.9 573,076 + -1.7 573,113 + -2.3 573,261 - GFF3684 0.13 -1.3 573,479 + GFF3684 0.31 +0.5 573,602 + GFF3684 0.40 -3.6 573,722 + GFF3684 0.50 -2.1 573,873 - GFF3684 0.62 -2.0 573,881 + GFF3684 0.63 -1.3
Or see this region's nucleotide sequence