Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3601 and GFF3602 are separated by 138 nucleotides GFF3602 and GFF3603 are separated by 27 nucleotides GFF3603 and GFF3604 are separated by 121 nucleotides GFF3604 and GFF3605 are separated by 95 nucleotides GFF3605 and GFF3606 are separated by 97 nucleotides
GFF3601 - Ync, at 489,974 to 490,885
GFF3601
GFF3602 - hypothetical protein, at 491,024 to 491,566
GFF3602
GFF3603 - Plasmid conjugative transfer endonuclease, at 491,594 to 492,124
GFF3603
GFF3604 - hypothetical protein, at 492,246 to 492,500
GFF3604
GFF3605 - hypothetical protein, at 492,596 to 492,802
GFF3605
GFF3606 - hypothetical protein, at 492,900 to 493,295
GFF3606
Position (kb) 491
492
493 Strain fitness (log2 ratio) -1
0
1 at 490.763 kb on - strand, within GFF3601 at 490.864 kb on - strand at 490.864 kb on - strand at 490.864 kb on - strand at 490.864 kb on - strand at 490.907 kb on + strand at 490.908 kb on - strand at 490.983 kb on + strand at 490.983 kb on + strand at 491.025 kb on + strand at 491.026 kb on - strand at 491.102 kb on - strand, within GFF3602 at 491.650 kb on - strand, within GFF3603 at 491.956 kb on - strand, within GFF3603 at 492.202 kb on + strand at 492.618 kb on + strand, within GFF3605 at 492.829 kb on + strand at 492.830 kb on - strand at 493.015 kb on - strand, within GFF3606 at 493.015 kb on - strand, within GFF3606 at 493.086 kb on + strand, within GFF3606 at 493.087 kb on - strand, within GFF3606 at 493.087 kb on - strand, within GFF3606 at 493.087 kb on - strand, within GFF3606
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 490,763 - GFF3601 0.87 -0.1 490,864 - +0.2 490,864 - -0.3 490,864 - +0.6 490,864 - -0.3 490,907 + +0.4 490,908 - +0.1 490,983 + -0.1 490,983 + -0.7 491,025 + -0.8 491,026 - -0.4 491,102 - GFF3602 0.14 +0.1 491,650 - GFF3603 0.11 -0.4 491,956 - GFF3603 0.68 -1.7 492,202 + -0.1 492,618 + GFF3605 0.11 +1.1 492,829 + -0.1 492,830 - +0.5 493,015 - GFF3606 0.29 -0.1 493,015 - GFF3606 0.29 -0.1 493,086 + GFF3606 0.47 +0.5 493,087 - GFF3606 0.47 +0.4 493,087 - GFF3606 0.47 -0.5 493,087 - GFF3606 0.47 -0.9
Or see this region's nucleotide sequence