Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3543

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
433,335	+		GFF3542	0.38	+1.0
433,335	+		GFF3542	0.38	-0.2
433,336	-		GFF3542	0.38	+0.2
433,624	-		GFF3542	0.65	+0.1
434,028	+		GFF3543	0.16	-0.2
434,029	-		GFF3543	0.16	-0.2
434,030	-		GFF3543	0.17	-0.4
434,119	-		GFF3543	0.78	-0.3
434,119	-		GFF3543	0.78	-0.2
434,344	+		GFF3544	0.11	-0.4
434,344	+		GFF3544	0.11	+1.1
434,536	+		GFF3544	0.22	+1.1
434,537	-		GFF3544	0.22	+1.0
434,537	-		GFF3544	0.22	+1.0
434,656	+		GFF3544	0.29	+0.3
434,837	-		GFF3544	0.39	+0.1
435,010	+		GFF3544	0.49	-0.1
435,011	-		GFF3544	0.49	+0.8
435,011	-		GFF3544	0.49	+0.3
435,011	-		GFF3544	0.49	+0.2
435,011	-		GFF3544	0.49	+0.1