Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3306

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
190,388	+				+0.8
190,389	-				-0.5
190,694	+				+0.2
190,694	+				-0.1
190,695	-				+0.2
190,695	-				+0.0
191,086	-				-1.1
191,161	-		GFF3306	0.10	-0.4
191,296	-		GFF3306	0.16	-0.3
191,296	-		GFF3306	0.16	+0.2
191,409	+		GFF3306	0.21	+0.3
191,466	+		GFF3306	0.24	-0.1
191,676	+		GFF3306	0.33	-0.6
191,677	-		GFF3306	0.33	+0.5
192,237	-		GFF3306	0.57	+0.3
192,531	+		GFF3306	0.70	-0.7
192,774	+		GFF3306	0.81	+0.1
192,775	-		GFF3306	0.81	-0.5
192,775	-		GFF3306	0.81	-0.2
193,074	+				+0.2
193,093	-				-0.6
193,093	-				-0.2
193,174	-				-1.1
193,434	+		GFF3307	0.10	-2.4