Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3301 and GFF3302 are separated by 11 nucleotides GFF3302 and GFF3303 are separated by 14 nucleotides GFF3303 and GFF3304 are separated by 69 nucleotides
GFF3301 - Cytosine deaminase (EC 3.5.4.1), at 185,522 to 185,983
GFF3301
GFF3302 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 185,995 to 186,762
GFF3302
GFF3303 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 186,777 to 187,607
GFF3303
GFF3304 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 187,677 to 188,711
GFF3304
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1 at 185.794 kb on - strand, within GFF3301 at 185.805 kb on + strand, within GFF3301 at 186.062 kb on + strand at 186.239 kb on + strand, within GFF3302 at 186.862 kb on + strand, within GFF3303 at 186.862 kb on + strand, within GFF3303 at 186.863 kb on - strand, within GFF3303 at 187.228 kb on + strand, within GFF3303 at 187.549 kb on + strand at 187.679 kb on - strand at 188.063 kb on - strand, within GFF3304 at 188.077 kb on + strand, within GFF3304 at 188.078 kb on - strand, within GFF3304 at 188.380 kb on + strand, within GFF3304 at 188.381 kb on - strand, within GFF3304 at 188.473 kb on + strand, within GFF3304 at 188.474 kb on - strand, within GFF3304 at 188.474 kb on - strand, within GFF3304 at 188.557 kb on + strand, within GFF3304 at 188.558 kb on - strand, within GFF3304
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 185,794 - GFF3301 0.59 +0.1 185,805 + GFF3301 0.61 +0.4 186,062 + -0.8 186,239 + GFF3302 0.32 -1.5 186,862 + GFF3303 0.10 -0.9 186,862 + GFF3303 0.10 -0.7 186,863 - GFF3303 0.10 +0.5 187,228 + GFF3303 0.54 -0.3 187,549 + -0.3 187,679 - +1.0 188,063 - GFF3304 0.37 -0.1 188,077 + GFF3304 0.39 -0.1 188,078 - GFF3304 0.39 -0.1 188,380 + GFF3304 0.68 +0.5 188,381 - GFF3304 0.68 +0.2 188,473 + GFF3304 0.77 -0.4 188,474 - GFF3304 0.77 +0.7 188,474 - GFF3304 0.77 -0.4 188,557 + GFF3304 0.85 -0.9 188,558 - GFF3304 0.85 -1.0
Or see this region's nucleotide sequence