Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3242 and GFF3243 are separated by 309 nucleotides GFF3243 and GFF3244 are separated by 213 nucleotides GFF3244 and GFF3245 are separated by 22 nucleotides
GFF3242 - hypothetical protein, at 124,924 to 125,175
GFF3242
GFF3243 - Catalase (EC 1.11.1.6), at 125,485 to 127,014
GFF3243
GFF3244 - Rhodanese-related sulfurtransferases, at 127,228 to 127,755
GFF3244
GFF3245 - Transcriptional regulator, ArsR family, at 127,778 to 128,089
GFF3245
Position (kb) 125
126
127
128 Strain fitness (log2 ratio) -1
0
1 at 124.512 kb on - strand at 124.659 kb on + strand at 124.659 kb on + strand at 124.660 kb on - strand at 124.662 kb on - strand at 124.665 kb on + strand at 124.666 kb on - strand at 124.666 kb on - strand at 124.815 kb on - strand at 124.840 kb on + strand at 124.890 kb on - strand at 124.890 kb on - strand at 124.912 kb on + strand at 124.912 kb on + strand at 124.994 kb on + strand, within GFF3242 at 125.045 kb on + strand, within GFF3242 at 125.045 kb on + strand, within GFF3242 at 125.046 kb on - strand, within GFF3242 at 125.121 kb on - strand, within GFF3242 at 125.412 kb on + strand at 125.413 kb on - strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.591 kb on + strand at 125.738 kb on + strand, within GFF3243 at 125.739 kb on - strand, within GFF3243 at 125.759 kb on + strand, within GFF3243 at 125.849 kb on + strand, within GFF3243 at 125.850 kb on - strand, within GFF3243 at 125.867 kb on + strand, within GFF3243 at 125.878 kb on + strand, within GFF3243 at 125.878 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.985 kb on - strand, within GFF3243 at 125.989 kb on - strand, within GFF3243 at 125.989 kb on - strand, within GFF3243 at 126.146 kb on + strand, within GFF3243 at 126.146 kb on + strand, within GFF3243 at 126.147 kb on - strand, within GFF3243 at 126.218 kb on + strand, within GFF3243 at 126.218 kb on + strand, within GFF3243 at 126.218 kb on + strand, within GFF3243 at 126.218 kb on + strand, within GFF3243 at 126.219 kb on - strand, within GFF3243 at 126.219 kb on - strand, within GFF3243 at 126.261 kb on - strand, within GFF3243 at 126.398 kb on + strand, within GFF3243 at 126.398 kb on + strand, within GFF3243 at 126.399 kb on + strand, within GFF3243 at 126.399 kb on - strand, within GFF3243 at 126.432 kb on - strand, within GFF3243 at 126.504 kb on - strand, within GFF3243 at 126.504 kb on - strand, within GFF3243 at 126.647 kb on + strand, within GFF3243 at 126.647 kb on + strand, within GFF3243 at 126.647 kb on + strand, within GFF3243 at 126.647 kb on + strand, within GFF3243 at 126.648 kb on - strand, within GFF3243 at 126.648 kb on - strand, within GFF3243 at 126.776 kb on + strand, within GFF3243 at 126.776 kb on + strand, within GFF3243 at 126.777 kb on - strand, within GFF3243 at 126.777 kb on - strand, within GFF3243 at 126.777 kb on - strand, within GFF3243 at 126.807 kb on + strand, within GFF3243 at 126.807 kb on + strand, within GFF3243 at 127.032 kb on + strand at 127.032 kb on + strand at 127.502 kb on + strand, within GFF3244 at 127.502 kb on + strand, within GFF3244 at 127.502 kb on + strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.503 kb on - strand, within GFF3244 at 127.618 kb on + strand, within GFF3244 at 127.842 kb on + strand, within GFF3245 at 127.842 kb on + strand, within GFF3245 at 127.842 kb on + strand, within GFF3245 at 127.843 kb on - strand, within GFF3245 at 127.843 kb on - strand, within GFF3245 at 127.869 kb on + strand, within GFF3245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 124,512 - +0.4 124,659 + -0.4 124,659 + -1.2 124,660 - -0.3 124,662 - -0.1 124,665 + +0.6 124,666 - +0.9 124,666 - -0.2 124,815 - +0.0 124,840 + -1.6 124,890 - +0.3 124,890 - -0.2 124,912 + +1.2 124,912 + +0.7 124,994 + GFF3242 0.28 +1.2 125,045 + GFF3242 0.48 +0.1 125,045 + GFF3242 0.48 -0.0 125,046 - GFF3242 0.48 -0.5 125,121 - GFF3242 0.78 +1.5 125,412 + +0.9 125,413 - +0.4 125,468 + -0.9 125,468 + +0.7 125,469 - +0.7 125,469 - -0.3 125,591 + +1.6 125,738 + GFF3243 0.17 -0.3 125,739 - GFF3243 0.17 +0.2 125,759 + GFF3243 0.18 -0.7 125,849 + GFF3243 0.24 +0.2 125,850 - GFF3243 0.24 -0.2 125,867 + GFF3243 0.25 +0.4 125,878 + GFF3243 0.26 -0.4 125,878 + GFF3243 0.26 -0.5 125,984 + GFF3243 0.33 -0.1 125,984 + GFF3243 0.33 +0.8 125,984 + GFF3243 0.33 -0.6 125,985 - GFF3243 0.33 +0.3 125,989 - GFF3243 0.33 -0.4 125,989 - GFF3243 0.33 +0.4 126,146 + GFF3243 0.43 -0.0 126,146 + GFF3243 0.43 +0.9 126,147 - GFF3243 0.43 -0.1 126,218 + GFF3243 0.48 -0.1 126,218 + GFF3243 0.48 -0.1 126,218 + GFF3243 0.48 +0.1 126,218 + GFF3243 0.48 -0.5 126,219 - GFF3243 0.48 +0.2 126,219 - GFF3243 0.48 -0.7 126,261 - GFF3243 0.51 +0.4 126,398 + GFF3243 0.60 +0.2 126,398 + GFF3243 0.60 +0.1 126,399 + GFF3243 0.60 -0.2 126,399 - GFF3243 0.60 +0.2 126,432 - GFF3243 0.62 +0.2 126,504 - GFF3243 0.67 +0.3 126,504 - GFF3243 0.67 +0.2 126,647 + GFF3243 0.76 -0.6 126,647 + GFF3243 0.76 -0.1 126,647 + GFF3243 0.76 -0.2 126,647 + GFF3243 0.76 +0.1 126,648 - GFF3243 0.76 +1.1 126,648 - GFF3243 0.76 -0.4 126,776 + GFF3243 0.84 -0.1 126,776 + GFF3243 0.84 +0.5 126,777 - GFF3243 0.84 -0.1 126,777 - GFF3243 0.84 -0.0 126,777 - GFF3243 0.84 +0.5 126,807 + GFF3243 0.86 +0.5 126,807 + GFF3243 0.86 +0.1 127,032 + -0.0 127,032 + -0.4 127,502 + GFF3244 0.52 +0.3 127,502 + GFF3244 0.52 +0.8 127,502 + GFF3244 0.52 +0.4 127,503 - GFF3244 0.52 -0.2 127,503 - GFF3244 0.52 -0.1 127,503 - GFF3244 0.52 -0.2 127,503 - GFF3244 0.52 +0.3 127,618 + GFF3244 0.74 +0.3 127,842 + GFF3245 0.21 +0.2 127,842 + GFF3245 0.21 +1.0 127,842 + GFF3245 0.21 -1.4 127,843 - GFF3245 0.21 -0.3 127,843 - GFF3245 0.21 -0.1 127,869 + GFF3245 0.29 +0.3
Or see this region's nucleotide sequence