Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3235

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
116,627	+		GFF3233	0.78	+0.5
116,684	+		GFF3233	0.83	+2.5
116,684	+		GFF3233	0.83	-0.2
116,837	+				-0.8
116,874	+				-1.0
116,875	-				-0.9
116,952	-				-0.3
117,122	+		GFF3234	0.33	+0.6
117,122	+		GFF3234	0.33	-0.8
117,122	+		GFF3234	0.33	+0.0
117,123	-		GFF3234	0.33	-0.4
117,123	-		GFF3234	0.33	+0.1
117,452	+		GFF3234	0.77	-1.1
117,452	+		GFF3234	0.77	-0.3
117,453	-		GFF3234	0.77	-1.3
117,506	+		GFF3234	0.85	+0.5
117,506	+		GFF3234	0.85	-1.0
117,896	-		GFF3235	0.39	-0.4
117,896	-		GFF3235	0.39	-0.7
117,940	+		GFF3235	0.46	+0.3
118,199	-		GFF3235	0.82	-0.8
118,199	-		GFF3235	0.82	-0.7
118,199	-		GFF3235	0.82	+0.5
118,581	+		GFF3236	0.24	-0.5
119,020	+		GFF3236	0.76	+0.0