Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3144 and GFF3145 are separated by 7 nucleotides GFF3145 and GFF3146 overlap by 4 nucleotides GFF3146 and GFF3147 overlap by 14 nucleotides
GFF3144 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 21,293 to 23,875
GFF3144
GFF3145 - Conjugative transfer protein TraV, at 23,883 to 24,620
GFF3145
GFF3146 - Thiol:disulfide involved in conjugative transfer, at 24,617 to 25,486
GFF3146
GFF3147 - IncF plasmid conjugative transfer pilus assembly protein TraB, at 25,473 to 26,891
GFF3147
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.754 kb on + strand at 23.764 kb on - strand at 24.130 kb on + strand, within GFF3145 at 24.137 kb on - strand, within GFF3145 at 24.137 kb on - strand, within GFF3145 at 24.413 kb on - strand, within GFF3145 at 24.413 kb on - strand, within GFF3145 at 24.413 kb on - strand, within GFF3145 at 24.514 kb on - strand, within GFF3145 at 24.564 kb on - strand at 24.842 kb on + strand, within GFF3146 at 24.933 kb on + strand, within GFF3146 at 25.079 kb on + strand, within GFF3146 at 25.228 kb on - strand, within GFF3146 at 25.228 kb on - strand, within GFF3146 at 25.258 kb on - strand, within GFF3146 at 25.258 kb on - strand, within GFF3146 at 25.477 kb on + strand at 25.478 kb on - strand at 25.478 kb on - strand at 25.657 kb on + strand, within GFF3147 at 25.658 kb on - strand, within GFF3147 at 25.660 kb on + strand, within GFF3147 at 25.661 kb on - strand, within GFF3147 at 25.661 kb on - strand, within GFF3147 at 25.768 kb on + strand, within GFF3147
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 23,754 + +0.6 23,764 - +1.2 24,130 + GFF3145 0.33 -1.1 24,137 - GFF3145 0.34 -0.3 24,137 - GFF3145 0.34 -0.2 24,413 - GFF3145 0.72 +0.5 24,413 - GFF3145 0.72 -0.8 24,413 - GFF3145 0.72 -0.2 24,514 - GFF3145 0.86 +0.4 24,564 - +0.6 24,842 + GFF3146 0.26 -0.0 24,933 + GFF3146 0.36 -1.1 25,079 + GFF3146 0.53 -0.2 25,228 - GFF3146 0.70 -1.5 25,228 - GFF3146 0.70 +0.7 25,258 - GFF3146 0.74 -0.4 25,258 - GFF3146 0.74 -0.0 25,477 + -0.1 25,478 - +0.5 25,478 - +0.5 25,657 + GFF3147 0.13 +0.2 25,658 - GFF3147 0.13 -0.2 25,660 + GFF3147 0.13 -0.0 25,661 - GFF3147 0.13 +0.4 25,661 - GFF3147 0.13 -0.2 25,768 + GFF3147 0.21 +0.4
Or see this region's nucleotide sequence