Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3043

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
122,711	+				+0.7
122,712	-				-0.0
122,712	-				-0.2
123,198	+		GFF3042	0.44	-2.6
123,246	+		GFF3042	0.50	+0.6
123,247	-		GFF3042	0.50	-1.0
123,327	+		GFF3042	0.60	-0.1
123,327	+		GFF3042	0.60	-0.1
123,327	+		GFF3042	0.60	-1.1
123,327	+		GFF3042	0.60	+0.2
123,328	-		GFF3042	0.60	-1.0
123,328	-		GFF3042	0.60	-0.5
123,328	-		GFF3042	0.60	-1.3
123,367	-		GFF3042	0.65	-1.0
123,645	-				+2.8
123,685	+				+0.2
123,686	-				+0.7
123,686	-				+0.2
123,686	-				+0.1
123,688	-				-0.2
123,688	-				+0.6
124,146	-		GFF3043	0.49	-1.8
124,368	+		GFF3043	0.73	-0.8
124,368	+		GFF3043	0.73	-0.5
124,369	-		GFF3043	0.73	-0.8
124,569	+				-0.2
124,826	+		GFF3044	0.16	+0.1
124,826	+		GFF3044	0.16	+0.1
125,009	+		GFF3044	0.31	-0.4
125,009	+		GFF3044	0.31	+0.9
125,009	+		GFF3044	0.31	+0.5
125,010	-		GFF3044	0.31	+0.4
125,010	-		GFF3044	0.31	+1.5
125,010	-		GFF3044	0.31	+0.1
125,010	-		GFF3044	0.31	+0.0
125,042	+		GFF3044	0.33	-0.7
125,096	+		GFF3044	0.38	+0.8
125,096	+		GFF3044	0.38	+0.1
125,097	-		GFF3044	0.38	-0.3
125,097	-		GFF3044	0.38	+1.2
125,345	+		GFF3044	0.58	+1.5
125,345	+		GFF3044	0.58	+1.1
125,345	+		GFF3044	0.58	+0.7
125,345	+		GFF3044	0.58	-0.1
125,345	+		GFF3044	0.58	+0.6
125,345	+		GFF3044	0.58	-0.0
125,346	-		GFF3044	0.58	-0.6
125,346	-		GFF3044	0.58	+0.1