Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3016 and GFF3017 are separated by 3 nucleotides GFF3017 and GFF3018 overlap by 4 nucleotides GFF3018 and GFF3019 overlap by 4 nucleotides
GFF3016 - FIG143263: Glycosyl transferase, at 93,707 to 94,465
GFF3016
GFF3017 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 94,469 to 95,269
GFF3017
GFF3018 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 95,266 to 96,267
GFF3018
GFF3019 - FIG022199: FAD-binding protein, at 96,264 to 97,601
GFF3019
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 94.422 kb on + strand at 94.422 kb on + strand at 94.423 kb on - strand at 94.423 kb on - strand at 94.423 kb on - strand at 94.423 kb on - strand at 94.423 kb on - strand at 94.530 kb on + strand at 94.531 kb on - strand at 94.531 kb on - strand at 94.531 kb on - strand at 94.653 kb on + strand, within GFF3017 at 94.654 kb on - strand, within GFF3017 at 94.654 kb on - strand, within GFF3017 at 94.861 kb on - strand, within GFF3017 at 94.861 kb on - strand, within GFF3017 at 95.074 kb on - strand, within GFF3017 at 95.074 kb on - strand, within GFF3017 at 95.223 kb on + strand at 95.224 kb on - strand at 95.224 kb on - strand at 95.420 kb on + strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.447 kb on + strand, within GFF3018 at 95.654 kb on + strand, within GFF3018 at 95.654 kb on + strand, within GFF3018 at 95.823 kb on - strand, within GFF3018 at 95.888 kb on + strand, within GFF3018 at 95.888 kb on + strand, within GFF3018 at 95.889 kb on - strand, within GFF3018 at 95.889 kb on - strand, within GFF3018 at 96.023 kb on + strand, within GFF3018 at 96.023 kb on + strand, within GFF3018 at 96.334 kb on + strand at 96.334 kb on + strand at 96.335 kb on - strand at 96.370 kb on + strand at 96.370 kb on + strand at 96.371 kb on - strand at 96.371 kb on - strand at 96.371 kb on - strand at 96.419 kb on - strand, within GFF3019 at 96.517 kb on + strand, within GFF3019 at 96.518 kb on - strand, within GFF3019 at 96.691 kb on + strand, within GFF3019 at 96.691 kb on + strand, within GFF3019 at 96.692 kb on - strand, within GFF3019 at 96.692 kb on - strand, within GFF3019 at 96.712 kb on + strand, within GFF3019 at 96.712 kb on + strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.877 kb on + strand, within GFF3019 at 97.016 kb on - strand, within GFF3019
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 94,422 + -0.8 94,422 + -0.0 94,423 - +0.1 94,423 - -0.1 94,423 - -0.1 94,423 - +0.2 94,423 - -0.7 94,530 + +0.9 94,531 - +0.2 94,531 - -0.2 94,531 - +0.1 94,653 + GFF3017 0.23 +0.7 94,654 - GFF3017 0.23 -0.1 94,654 - GFF3017 0.23 +2.0 94,861 - GFF3017 0.49 +0.5 94,861 - GFF3017 0.49 -0.1 95,074 - GFF3017 0.76 -0.3 95,074 - GFF3017 0.76 +0.2 95,223 + +0.9 95,224 - +1.1 95,224 - +0.6 95,420 + GFF3018 0.15 -1.3 95,421 - GFF3018 0.15 -1.1 95,421 - GFF3018 0.15 -1.0 95,421 - GFF3018 0.15 -0.3 95,447 + GFF3018 0.18 -0.7 95,654 + GFF3018 0.39 -1.5 95,654 + GFF3018 0.39 -1.0 95,823 - GFF3018 0.56 -1.6 95,888 + GFF3018 0.62 -1.2 95,888 + GFF3018 0.62 -0.7 95,889 - GFF3018 0.62 -2.1 95,889 - GFF3018 0.62 -2.0 96,023 + GFF3018 0.76 -1.9 96,023 + GFF3018 0.76 -2.1 96,334 + -0.5 96,334 + -1.5 96,335 - -0.1 96,370 + -0.1 96,370 + +1.1 96,371 - +0.2 96,371 - -0.8 96,371 - +0.6 96,419 - GFF3019 0.12 -0.3 96,517 + GFF3019 0.19 -0.3 96,518 - GFF3019 0.19 -0.8 96,691 + GFF3019 0.32 -0.7 96,691 + GFF3019 0.32 -0.3 96,692 - GFF3019 0.32 -0.7 96,692 - GFF3019 0.32 -1.1 96,712 + GFF3019 0.33 -1.3 96,712 + GFF3019 0.33 -0.6 96,713 - GFF3019 0.34 -0.5 96,713 - GFF3019 0.34 -0.4 96,713 - GFF3019 0.34 -0.6 96,713 - GFF3019 0.34 -0.8 96,713 - GFF3019 0.34 -0.6 96,713 - GFF3019 0.34 +0.1 96,877 + GFF3019 0.46 -2.8 97,016 - GFF3019 0.56 -1.1
Or see this region's nucleotide sequence