Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2982 and GFF2983 are separated by 119 nucleotides GFF2983 and GFF2984 are separated by 56 nucleotides GFF2984 and GFF2985 are separated by 18 nucleotides GFF2985 and GFF2986 are separated by 18 nucleotides
GFF2982 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 60,345 to 63,896
GFF2982
GFF2983 - Enoyl-CoA hydratase (EC 4.2.1.17), at 64,016 to 64,792
GFF2983
GFF2984 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 64,849 to 65,289
GFF2984
GFF2985 - Fumarylacetoacetate hydrolase family protein, at 65,308 to 66,177
GFF2985
GFF2986 - Transcriptional regulator, GntR family, at 66,196 to 66,831
GFF2986
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1 at 64.347 kb on + strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.348 kb on - strand, within GFF2983 at 64.372 kb on - strand, within GFF2983 at 64.419 kb on - strand, within GFF2983 at 64.808 kb on - strand at 64.808 kb on - strand at 65.272 kb on + strand at 65.679 kb on - strand, within GFF2985 at 65.679 kb on - strand, within GFF2985 at 65.679 kb on - strand, within GFF2985 at 65.709 kb on - strand, within GFF2985 at 65.793 kb on - strand, within GFF2985 at 65.793 kb on - strand, within GFF2985 at 65.793 kb on - strand, within GFF2985 at 65.921 kb on + strand, within GFF2985 at 65.922 kb on - strand, within GFF2985 at 65.922 kb on - strand, within GFF2985 at 66.227 kb on + strand at 66.227 kb on + strand at 66.227 kb on + strand at 66.227 kb on + strand at 66.227 kb on + strand at 66.228 kb on - strand at 66.228 kb on - strand at 66.228 kb on - strand at 66.257 kb on + strand at 66.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 64,347 + GFF2983 0.43 -0.5 64,348 - GFF2983 0.43 -1.0 64,348 - GFF2983 0.43 -0.2 64,348 - GFF2983 0.43 -0.3 64,372 - GFF2983 0.46 +0.5 64,419 - GFF2983 0.52 +0.2 64,808 - +0.3 64,808 - -0.5 65,272 + +0.6 65,679 - GFF2985 0.43 -0.1 65,679 - GFF2985 0.43 -0.0 65,679 - GFF2985 0.43 +0.0 65,709 - GFF2985 0.46 -0.1 65,793 - GFF2985 0.56 +0.5 65,793 - GFF2985 0.56 -0.3 65,793 - GFF2985 0.56 -0.1 65,921 + GFF2985 0.70 -0.1 65,922 - GFF2985 0.71 -0.8 65,922 - GFF2985 0.71 -0.4 66,227 + -1.1 66,227 + -0.3 66,227 + -0.8 66,227 + -0.6 66,227 + -0.6 66,228 - -1.8 66,228 - +1.1 66,228 - -0.4 66,257 + -0.4 66,258 - -0.4
Or see this region's nucleotide sequence