Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2674 and GFF2675 are separated by 112 nucleotides GFF2675 and GFF2676 are separated by 255 nucleotides
GFF2674 - Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme, at 263,673 to 264,599
GFF2674
GFF2675 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 264,712 to 265,800
GFF2675
GFF2676 - Tricarboxylate transport protein TctC, at 266,056 to 267,042
GFF2676
Position (kb) 264
265
266 Strain fitness (log2 ratio) -1
0
1 at 263.836 kb on + strand, within GFF2674 at 263.836 kb on + strand, within GFF2674 at 263.995 kb on + strand, within GFF2674 at 263.996 kb on - strand, within GFF2674 at 264.079 kb on + strand, within GFF2674 at 264.080 kb on - strand, within GFF2674 at 264.397 kb on + strand, within GFF2674 at 264.398 kb on - strand, within GFF2674 at 264.398 kb on - strand, within GFF2674 at 264.672 kb on + strand at 264.672 kb on + strand at 264.673 kb on - strand at 264.721 kb on + strand at 264.721 kb on + strand at 264.722 kb on - strand at 264.722 kb on - strand at 264.722 kb on - strand at 264.856 kb on + strand, within GFF2675 at 264.856 kb on + strand, within GFF2675 at 264.860 kb on - strand, within GFF2675 at 265.128 kb on - strand, within GFF2675 at 266.333 kb on - strand, within GFF2676 at 266.380 kb on + strand, within GFF2676 at 266.381 kb on - strand, within GFF2676 at 266.533 kb on + strand, within GFF2676 at 266.533 kb on + strand, within GFF2676 at 266.620 kb on + strand, within GFF2676 at 266.621 kb on - strand, within GFF2676
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 263,836 + GFF2674 0.18 -0.0 263,836 + GFF2674 0.18 +0.4 263,995 + GFF2674 0.35 +0.4 263,996 - GFF2674 0.35 +0.5 264,079 + GFF2674 0.44 -0.6 264,080 - GFF2674 0.44 -0.3 264,397 + GFF2674 0.78 +0.1 264,398 - GFF2674 0.78 +0.4 264,398 - GFF2674 0.78 -0.1 264,672 + +0.4 264,672 + +0.8 264,673 - +1.2 264,721 + +0.0 264,721 + -0.1 264,722 - +0.4 264,722 - +0.2 264,722 - +0.4 264,856 + GFF2675 0.13 -1.3 264,856 + GFF2675 0.13 +0.2 264,860 - GFF2675 0.14 -1.6 265,128 - GFF2675 0.38 +0.9 266,333 - GFF2676 0.28 -0.6 266,380 + GFF2676 0.33 -0.3 266,381 - GFF2676 0.33 +0.3 266,533 + GFF2676 0.48 +0.7 266,533 + GFF2676 0.48 -0.1 266,620 + GFF2676 0.57 -0.3 266,621 - GFF2676 0.57 +0.4
Or see this region's nucleotide sequence