Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF267

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF265 and GFF266 overlap by 4 nucleotidesGFF266 and GFF267 overlap by 9 nucleotidesGFF267 and GFF268 are separated by 12 nucleotidesGFF268 and GFF269 are separated by 4 nucleotidesGFF269 and GFF270 are separated by 17 nucleotides GFF265 - Outer membrane protein (porin), at 279,750 to 280,721 GFF265 GFF266 - hypothetical protein, at 280,718 to 280,948 GFF266 GFF267 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 280,940 to 282,187 GFF267 GFF268 - Transcriptional regulator, LysR family, at 282,200 to 282,715 GFF268 GFF269 - putative exported protein, at 282,720 to 283,061 GFF269 GFF270 - Transcriptional regulator, LysR family, at 283,079 to 284,062 GFF270 Position (kb) 280 281 282 283Strain fitness (log2 ratio) -2 -1 0 1at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.997 kb on + strand, within GFF265at 279.998 kb on - strand, within GFF265at 279.998 kb on - strand, within GFF265at 280.072 kb on + strand, within GFF265at 280.072 kb on + strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.094 kb on - strand, within GFF265at 280.094 kb on - strand, within GFF265at 280.157 kb on - strand, within GFF265at 280.213 kb on + strand, within GFF265at 280.213 kb on + strand, within GFF265at 280.214 kb on - strand, within GFF265at 280.214 kb on - strand, within GFF265at 280.256 kb on - strand, within GFF265at 280.285 kb on + strand, within GFF265at 280.306 kb on + strand, within GFF265at 280.307 kb on - strand, within GFF265at 280.307 kb on - strand, within GFF265at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.918 kb on - strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 281.063 kb on + strandat 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.106 kb on - strand, within GFF267at 281.171 kb on + strand, within GFF267at 281.172 kb on - strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.219 kb on + strand, within GFF267at 281.219 kb on + strand, within GFF267at 281.220 kb on - strand, within GFF267at 281.264 kb on + strand, within GFF267at 281.264 kb on + strand, within GFF267at 281.351 kb on + strand, within GFF267at 281.351 kb on + strand, within GFF267at 281.352 kb on - strand, within GFF267at 281.352 kb on - strand, within GFF267at 281.364 kb on - strand, within GFF267at 281.555 kb on + strand, within GFF267at 281.555 kb on + strand, within GFF267at 281.733 kb on - strand, within GFF267at 281.763 kb on - strand, within GFF267at 281.774 kb on + strand, within GFF267at 281.774 kb on + strand, within GFF267at 281.774 kb on + strand, within GFF267at 281.775 kb on - strand, within GFF267at 281.825 kb on + strand, within GFF267at 281.832 kb on - strand, within GFF267at 281.832 kb on - strand, within GFF267at 281.832 kb on - strand, within GFF267at 281.832 kb on - strand, within GFF267at 282.309 kb on - strand, within GFF268at 282.498 kb on + strand, within GFF268at 282.499 kb on - strand, within GFF268at 282.499 kb on - strand, within GFF268at 282.499 kb on - strand, within GFF268at 282.636 kb on + strand, within GFF268at 282.637 kb on - strand, within GFF268at 282.852 kb on + strand, within GFF269at 282.852 kb on + strand, within GFF269at 282.852 kb on + strand, within GFF269at 282.852 kb on + strand, within GFF269at 282.853 kb on - strand, within GFF269at 282.853 kb on - strand, within GFF269at 282.853 kb on - strand, within GFF269at 282.853 kb on - strand, within GFF269at 283.012 kb on - strand, within GFF269

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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279,940 + GFF265 0.20 -0.1
279,940 + GFF265 0.20 +0.0
279,940 + GFF265 0.20 +1.2
279,940 + GFF265 0.20 -1.8
279,940 + GFF265 0.20 +0.0
279,946 + GFF265 0.20 -0.4
279,946 + GFF265 0.20 -0.1
279,946 + GFF265 0.20 +0.4
279,947 - GFF265 0.20 +0.2
279,947 - GFF265 0.20 -0.4
279,947 - GFF265 0.20 +0.4
279,997 + GFF265 0.25 -0.0
279,998 - GFF265 0.26 -0.5
279,998 - GFF265 0.26 -0.1
280,072 + GFF265 0.33 +0.1
280,072 + GFF265 0.33 -0.5
280,073 - GFF265 0.33 +0.0
280,073 - GFF265 0.33 -0.7
280,073 - GFF265 0.33 +0.5
280,073 - GFF265 0.33 -0.1
280,093 + GFF265 0.35 -0.3
280,093 + GFF265 0.35 -0.5
280,093 + GFF265 0.35 -1.4
280,093 + GFF265 0.35 +0.2
280,094 - GFF265 0.35 -0.2
280,094 - GFF265 0.35 +0.7
280,157 - GFF265 0.42 +0.1
280,213 + GFF265 0.48 +0.4
280,213 + GFF265 0.48 -0.8
280,214 - GFF265 0.48 -0.4
280,214 - GFF265 0.48 -0.2
280,256 - GFF265 0.52 -1.6
280,285 + GFF265 0.55 -0.6
280,306 + GFF265 0.57 +0.8
280,307 - GFF265 0.57 -0.0
280,307 - GFF265 0.57 -0.2
280,796 + GFF266 0.34 -0.7
280,796 + GFF266 0.34 -0.6
280,796 + GFF266 0.34 -0.1
280,796 + GFF266 0.34 -0.5
280,796 + GFF266 0.34 -0.2
280,796 + GFF266 0.34 +0.0
280,796 + GFF266 0.34 +0.8
280,796 + GFF266 0.34 -0.9
280,797 - GFF266 0.34 +0.5
280,797 - GFF266 0.34 +0.2
280,797 - GFF266 0.34 -0.3
280,797 - GFF266 0.34 +0.4
280,797 - GFF266 0.34 -0.2
280,861 + GFF266 0.62 +0.1
280,861 + GFF266 0.62 +0.4
280,861 + GFF266 0.62 -0.4
280,862 - GFF266 0.62 -1.5
280,862 - GFF266 0.62 +0.4
280,862 - GFF266 0.62 +0.1
280,862 - GFF266 0.62 +0.1
280,862 - GFF266 0.62 -0.4
280,862 - GFF266 0.62 -0.5
280,862 - GFF266 0.62 -0.5
280,862 - GFF266 0.62 +1.0
280,917 + GFF266 0.86 -0.6
280,917 + GFF266 0.86 -0.3
280,917 + GFF266 0.86 -1.0
280,918 - GFF266 0.87 +0.3
280,924 + GFF266 0.89 +0.8
280,924 + GFF266 0.89 -0.8
280,924 + GFF266 0.89 -0.4
280,924 + GFF266 0.89 -0.3
280,924 + GFF266 0.89 -1.8
280,924 + GFF266 0.89 +0.9
280,925 - GFF266 0.90 -0.3
280,925 - GFF266 0.90 +0.5
280,925 - GFF266 0.90 -0.3
280,925 - GFF266 0.90 -1.3
280,925 - GFF266 0.90 -0.3
280,925 - GFF266 0.90 +0.8
281,063 + +0.1
281,105 + GFF267 0.13 +0.4
281,105 + GFF267 0.13 +0.7
281,105 + GFF267 0.13 +0.7
281,105 + GFF267 0.13 -0.3
281,105 + GFF267 0.13 +0.2
281,106 - GFF267 0.13 +0.7
281,171 + GFF267 0.19 -0.1
281,172 - GFF267 0.19 -0.3
281,216 + GFF267 0.22 +0.2
281,216 + GFF267 0.22 +1.2
281,216 + GFF267 0.22 -1.8
281,216 + GFF267 0.22 +0.1
281,217 - GFF267 0.22 +0.4
281,217 - GFF267 0.22 -0.0
281,217 - GFF267 0.22 +0.4
281,217 - GFF267 0.22 +0.6
281,219 + GFF267 0.22 -0.9
281,219 + GFF267 0.22 +0.6
281,220 - GFF267 0.22 -0.0
281,264 + GFF267 0.26 +0.3
281,264 + GFF267 0.26 +0.3
281,351 + GFF267 0.33 -0.1
281,351 + GFF267 0.33 +0.1
281,352 - GFF267 0.33 +0.2
281,352 - GFF267 0.33 -0.3
281,364 - GFF267 0.34 -0.2
281,555 + GFF267 0.49 +0.2
281,555 + GFF267 0.49 -0.1
281,733 - GFF267 0.64 -0.9
281,763 - GFF267 0.66 +0.4
281,774 + GFF267 0.67 +0.2
281,774 + GFF267 0.67 +0.2
281,774 + GFF267 0.67 -0.4
281,775 - GFF267 0.67 +0.3
281,825 + GFF267 0.71 -0.0
281,832 - GFF267 0.71 +1.1
281,832 - GFF267 0.71 +0.2
281,832 - GFF267 0.71 -1.3
281,832 - GFF267 0.71 -2.2
282,309 - GFF268 0.21 -0.0
282,498 + GFF268 0.58 -1.6
282,499 - GFF268 0.58 +0.3
282,499 - GFF268 0.58 -1.1
282,499 - GFF268 0.58 +0.4
282,636 + GFF268 0.84 -0.5
282,637 - GFF268 0.85 -0.9
282,852 + GFF269 0.39 -0.1
282,852 + GFF269 0.39 +0.1
282,852 + GFF269 0.39 -0.6
282,852 + GFF269 0.39 +0.0
282,853 - GFF269 0.39 +0.0
282,853 - GFF269 0.39 +0.0
282,853 - GFF269 0.39 +0.4
282,853 - GFF269 0.39 -0.2
283,012 - GFF269 0.85 +0.9

Or see this region's nucleotide sequence