Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF256

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF255 and GFF256 are separated by 14 nucleotidesGFF256 and GFF257 are separated by 133 nucleotides GFF255 - MFS permease, at 270,903 to 272,153 GFF255 GFF256 - hypothetical protein, at 272,168 to 272,389 GFF256 GFF257 - Sulfur oxidation molybdopterin C protein, at 272,523 to 273,866 GFF257 Position (kb) 272 273Strain fitness (log2 ratio) -2 -1 0 1at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.450 kb on - strand, within GFF255at 271.659 kb on + strand, within GFF255at 271.830 kb on + strand, within GFF255at 272.299 kb on - strand, within GFF256at 272.299 kb on - strand, within GFF256at 272.299 kb on - strand, within GFF256at 272.319 kb on + strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.321 kb on + strand, within GFF256at 272.341 kb on - strand, within GFF256at 272.341 kb on - strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.362 kb on - strand, within GFF256at 272.362 kb on - strand, within GFF256at 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.388 kb on - strandat 272.388 kb on - strandat 272.388 kb on - strandat 272.441 kb on + strandat 272.441 kb on + strandat 272.467 kb on - strandat 272.467 kb on - strandat 272.467 kb on - strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.772 kb on + strand, within GFF257at 272.773 kb on - strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.372 kb on + strand, within GFF257at 273.372 kb on + strand, within GFF257at 273.373 kb on - strand, within GFF257at 273.373 kb on - strand, within GFF257

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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271,449 + GFF255 0.44 -1.5
271,449 + GFF255 0.44 -0.1
271,449 + GFF255 0.44 -0.2
271,449 + GFF255 0.44 -0.6
271,450 - GFF255 0.44 +0.2
271,659 + GFF255 0.60 -0.4
271,830 + GFF255 0.74 -0.1
272,299 - GFF256 0.59 +0.2
272,299 - GFF256 0.59 -0.4
272,299 - GFF256 0.59 +0.5
272,319 + GFF256 0.68 +0.1
272,320 - GFF256 0.68 +0.1
272,320 - GFF256 0.68 -0.2
272,320 - GFF256 0.68 +0.5
272,321 + GFF256 0.69 -0.1
272,341 - GFF256 0.78 -0.3
272,341 - GFF256 0.78 -0.3
272,361 + GFF256 0.87 -0.1
272,361 + GFF256 0.87 -0.6
272,361 + GFF256 0.87 -0.6
272,361 + GFF256 0.87 -0.8
272,361 + GFF256 0.87 -1.2
272,362 - GFF256 0.87 +0.2
272,362 - GFF256 0.87 -1.6
272,387 + -0.9
272,387 + +0.3
272,387 + -0.7
272,387 + -1.2
272,387 + -0.1
272,387 + -0.3
272,387 + +0.1
272,387 + +0.7
272,387 + -0.0
272,387 + -0.0
272,387 + +0.6
272,388 - +0.2
272,388 - -0.1
272,388 - +0.5
272,441 + -0.7
272,441 + -0.0
272,467 - -0.2
272,467 - -0.0
272,467 - -1.4
272,468 + +0.1
272,468 + +0.3
272,468 + +0.4
272,468 + +0.1
272,468 + +0.2
272,468 + -0.0
272,468 + +0.1
272,469 - -0.5
272,469 - -0.2
272,469 - +0.2
272,469 - -0.5
272,469 - +0.3
272,469 - +1.4
272,772 + GFF257 0.19 +0.2
272,773 - GFF257 0.19 -0.4
273,105 + GFF257 0.43 +1.4
273,105 + GFF257 0.43 -0.2
273,105 + GFF257 0.43 -0.7
273,106 - GFF257 0.43 -0.9
273,106 - GFF257 0.43 -0.5
273,106 - GFF257 0.43 +0.3
273,198 + GFF257 0.50 +0.1
273,198 + GFF257 0.50 +0.3
273,198 + GFF257 0.50 -0.4
273,198 + GFF257 0.50 +0.1
273,198 + GFF257 0.50 +0.8
273,198 + GFF257 0.50 +0.3
273,199 - GFF257 0.50 +0.4
273,199 - GFF257 0.50 -0.1
273,199 - GFF257 0.50 -0.4
273,199 - GFF257 0.50 -0.4
273,199 - GFF257 0.50 -1.1
273,199 - GFF257 0.50 -0.3
273,199 - GFF257 0.50 +0.2
273,199 - GFF257 0.50 -0.2
273,199 - GFF257 0.50 -0.3
273,199 - GFF257 0.50 +0.3
273,199 - GFF257 0.50 -0.3
273,199 - GFF257 0.50 -0.4
273,372 + GFF257 0.63 +0.2
273,372 + GFF257 0.63 -1.8
273,373 - GFF257 0.63 -0.3
273,373 - GFF257 0.63 -0.1

Or see this region's nucleotide sequence