Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2524 and GFF2525 overlap by 4 nucleotides GFF2525 and GFF2526 are separated by 10 nucleotides GFF2526 and GFF2527 overlap by 4 nucleotides GFF2527 and GFF2528 overlap by 4 nucleotides
GFF2524 - FIG097052: Sugar transporter, at 106,003 to 107,319
GFF2524
GFF2525 - FIG026291: Hypothetical periplasmic protein, at 107,316 to 107,870
GFF2525
GFF2526 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 107,881 to 109,110
GFF2526
GFF2527 - Hypothetical protein COG3496, at 109,107 to 109,886
GFF2527
GFF2528 - COG2907: Amine oxidase, flavin-containing, at 109,883 to 111,241
GFF2528
Position (kb) 107
108
109
110 Strain fitness (log2 ratio) -2
-1
0
1 at 106.920 kb on - strand, within GFF2524 at 106.920 kb on - strand, within GFF2524 at 106.927 kb on - strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.929 kb on - strand, within GFF2524 at 107.195 kb on + strand at 107.195 kb on + strand at 107.196 kb on - strand at 107.216 kb on + strand at 107.216 kb on + strand at 107.217 kb on - strand at 107.217 kb on - strand at 107.217 kb on - strand at 107.217 kb on - strand at 107.262 kb on - strand at 107.461 kb on + strand, within GFF2525 at 107.461 kb on + strand, within GFF2525 at 107.462 kb on - strand, within GFF2525 at 107.644 kb on + strand, within GFF2525 at 107.722 kb on + strand, within GFF2525 at 107.722 kb on + strand, within GFF2525 at 107.722 kb on + strand, within GFF2525 at 107.722 kb on + strand, within GFF2525 at 107.723 kb on - strand, within GFF2525 at 107.740 kb on + strand, within GFF2525 at 107.957 kb on + strand at 107.958 kb on - strand at 108.059 kb on + strand, within GFF2526 at 108.139 kb on + strand, within GFF2526 at 108.140 kb on - strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.161 kb on + strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.162 kb on - strand, within GFF2526 at 108.278 kb on + strand, within GFF2526 at 108.279 kb on - strand, within GFF2526 at 108.290 kb on + strand, within GFF2526 at 108.632 kb on + strand, within GFF2526 at 108.633 kb on - strand, within GFF2526 at 108.633 kb on - strand, within GFF2526 at 108.656 kb on - strand, within GFF2526 at 108.662 kb on + strand, within GFF2526 at 108.684 kb on - strand, within GFF2526 at 108.694 kb on + strand, within GFF2526 at 108.749 kb on + strand, within GFF2526 at 108.750 kb on - strand, within GFF2526 at 108.777 kb on - strand, within GFF2526 at 108.777 kb on - strand, within GFF2526 at 108.863 kb on + strand, within GFF2526 at 108.863 kb on + strand, within GFF2526 at 108.863 kb on + strand, within GFF2526 at 108.864 kb on - strand, within GFF2526 at 108.864 kb on - strand, within GFF2526 at 109.343 kb on - strand, within GFF2527 at 109.469 kb on - strand, within GFF2527 at 109.489 kb on + strand, within GFF2527 at 109.489 kb on + strand, within GFF2527 at 109.489 kb on + strand, within GFF2527 at 109.490 kb on - strand, within GFF2527 at 109.490 kb on - strand, within GFF2527 at 109.490 kb on - strand, within GFF2527 at 109.490 kb on - strand, within GFF2527 at 109.490 kb on - strand, within GFF2527 at 109.564 kb on + strand, within GFF2527 at 109.610 kb on - strand, within GFF2527 at 110.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 106,920 - GFF2524 0.70 -0.4 106,920 - GFF2524 0.70 +0.1 106,927 - GFF2524 0.70 -1.1 106,928 + GFF2524 0.70 -0.2 106,928 + GFF2524 0.70 +0.3 106,928 + GFF2524 0.70 -0.2 106,928 + GFF2524 0.70 -1.5 106,928 + GFF2524 0.70 -1.8 106,928 + GFF2524 0.70 +1.0 106,928 + GFF2524 0.70 -1.5 106,928 + GFF2524 0.70 +0.1 106,928 + GFF2524 0.70 -0.9 106,928 + GFF2524 0.70 +0.1 106,929 - GFF2524 0.70 -0.5 107,195 + +0.5 107,195 + -0.0 107,196 - -0.5 107,216 + -1.1 107,216 + -0.2 107,217 - -1.4 107,217 - -0.0 107,217 - -0.5 107,217 - +0.1 107,262 - +0.7 107,461 + GFF2525 0.26 -0.4 107,461 + GFF2525 0.26 -0.0 107,462 - GFF2525 0.26 -1.0 107,644 + GFF2525 0.59 -0.5 107,722 + GFF2525 0.73 +0.0 107,722 + GFF2525 0.73 +1.0 107,722 + GFF2525 0.73 +1.5 107,722 + GFF2525 0.73 +0.5 107,723 - GFF2525 0.73 -0.1 107,740 + GFF2525 0.76 +0.5 107,957 + -0.8 107,958 - +0.0 108,059 + GFF2526 0.14 -0.5 108,139 + GFF2526 0.21 -0.5 108,140 - GFF2526 0.21 -0.5 108,161 + GFF2526 0.23 +0.2 108,161 + GFF2526 0.23 -0.2 108,161 + GFF2526 0.23 +0.0 108,161 + GFF2526 0.23 +0.3 108,161 + GFF2526 0.23 -0.1 108,161 + GFF2526 0.23 -0.9 108,161 + GFF2526 0.23 +0.5 108,161 + GFF2526 0.23 +1.1 108,161 + GFF2526 0.23 +0.7 108,162 - GFF2526 0.23 +0.0 108,162 - GFF2526 0.23 +0.8 108,162 - GFF2526 0.23 -1.5 108,162 - GFF2526 0.23 +0.5 108,162 - GFF2526 0.23 -0.1 108,162 - GFF2526 0.23 -0.9 108,162 - GFF2526 0.23 +0.2 108,162 - GFF2526 0.23 -0.1 108,162 - GFF2526 0.23 +0.0 108,278 + GFF2526 0.32 -0.2 108,279 - GFF2526 0.32 -1.5 108,290 + GFF2526 0.33 -0.2 108,632 + GFF2526 0.61 -0.0 108,633 - GFF2526 0.61 -0.5 108,633 - GFF2526 0.61 -0.1 108,656 - GFF2526 0.63 +0.2 108,662 + GFF2526 0.63 +0.3 108,684 - GFF2526 0.65 +0.7 108,694 + GFF2526 0.66 +0.3 108,749 + GFF2526 0.71 +0.8 108,750 - GFF2526 0.71 -0.4 108,777 - GFF2526 0.73 -0.1 108,777 - GFF2526 0.73 +0.0 108,863 + GFF2526 0.80 -0.8 108,863 + GFF2526 0.80 -0.6 108,863 + GFF2526 0.80 +0.4 108,864 - GFF2526 0.80 -0.4 108,864 - GFF2526 0.80 +0.1 109,343 - GFF2527 0.30 -2.4 109,469 - GFF2527 0.46 -0.6 109,489 + GFF2527 0.49 -1.1 109,489 + GFF2527 0.49 -0.2 109,489 + GFF2527 0.49 -0.5 109,490 - GFF2527 0.49 +0.8 109,490 - GFF2527 0.49 -0.0 109,490 - GFF2527 0.49 -0.4 109,490 - GFF2527 0.49 -0.1 109,490 - GFF2527 0.49 -0.0 109,564 + GFF2527 0.59 -0.4 109,610 - GFF2527 0.64 -0.3 110,014 - -0.9
Or see this region's nucleotide sequence