Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2447 and GFF2448 overlap by 4 nucleotides GFF2448 and GFF2449 are separated by 6 nucleotides GFF2449 and GFF2450 are separated by 205 nucleotides
GFF2447 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 27,745 to 28,914
GFF2447
GFF2448 - Methionine biosynthesis protein MetW, at 28,911 to 29,492
GFF2448
GFF2449 - Transglutaminase-like domain, at 29,499 to 30,188
GFF2449
GFF2450 - Positive regulator of CheA protein activity (CheW), at 30,394 to 30,921
GFF2450
Position (kb) 28
29
30 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 28.009 kb on + strand, within GFF2447 at 28.009 kb on + strand, within GFF2447 at 28.010 kb on - strand, within GFF2447 at 28.238 kb on - strand, within GFF2447 at 28.364 kb on - strand, within GFF2447 at 28.364 kb on - strand, within GFF2447 at 28.429 kb on + strand, within GFF2447 at 28.519 kb on + strand, within GFF2447 at 28.519 kb on + strand, within GFF2447 at 28.520 kb on - strand, within GFF2447 at 28.525 kb on + strand, within GFF2447 at 28.526 kb on - strand, within GFF2447 at 28.561 kb on + strand, within GFF2447 at 28.561 kb on + strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.562 kb on - strand, within GFF2447 at 28.594 kb on + strand, within GFF2447 at 28.594 kb on + strand, within GFF2447 at 28.613 kb on - strand, within GFF2447 at 28.613 kb on - strand, within GFF2447 at 28.613 kb on - strand, within GFF2447 at 28.613 kb on - strand, within GFF2447 at 28.639 kb on + strand, within GFF2447 at 28.639 kb on + strand, within GFF2447 at 28.640 kb on - strand, within GFF2447 at 28.640 kb on - strand, within GFF2447 at 28.640 kb on - strand, within GFF2447 at 28.801 kb on + strand at 28.801 kb on + strand at 28.801 kb on + strand at 28.802 kb on - strand at 28.802 kb on - strand at 29.037 kb on + strand, within GFF2448 at 29.116 kb on + strand, within GFF2448 at 29.319 kb on + strand, within GFF2448 at 29.320 kb on - strand, within GFF2448 at 29.320 kb on - strand, within GFF2448 at 29.320 kb on - strand, within GFF2448 at 29.320 kb on - strand, within GFF2448 at 29.320 kb on - strand, within GFF2448 at 29.329 kb on - strand, within GFF2448 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.650 kb on + strand, within GFF2449 at 29.651 kb on - strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.689 kb on + strand, within GFF2449 at 29.690 kb on - strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 29.959 kb on + strand, within GFF2449 at 30.025 kb on + strand, within GFF2449 at 30.025 kb on + strand, within GFF2449 at 30.026 kb on - strand, within GFF2449 at 30.026 kb on - strand, within GFF2449 at 30.199 kb on + strand at 30.230 kb on + strand at 30.230 kb on + strand at 30.231 kb on - strand at 30.231 kb on - strand at 30.270 kb on - strand at 30.270 kb on - strand at 30.270 kb on - strand at 30.323 kb on + strand at 30.323 kb on + strand at 30.324 kb on - strand at 30.324 kb on - strand at 30.376 kb on + strand at 30.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 28,009 + GFF2447 0.23 -3.4 28,009 + GFF2447 0.23 -1.5 28,010 - GFF2447 0.23 -3.1 28,238 - GFF2447 0.42 -1.2 28,364 - GFF2447 0.53 -1.5 28,364 - GFF2447 0.53 -1.1 28,429 + GFF2447 0.58 -2.2 28,519 + GFF2447 0.66 -2.1 28,519 + GFF2447 0.66 -1.1 28,520 - GFF2447 0.66 -0.9 28,525 + GFF2447 0.67 -2.5 28,526 - GFF2447 0.67 -2.5 28,561 + GFF2447 0.70 -1.7 28,561 + GFF2447 0.70 -2.7 28,562 - GFF2447 0.70 -2.7 28,562 - GFF2447 0.70 -1.4 28,562 - GFF2447 0.70 -2.9 28,562 - GFF2447 0.70 -1.5 28,562 - GFF2447 0.70 -3.2 28,562 - GFF2447 0.70 -4.4 28,594 + GFF2447 0.73 -1.1 28,594 + GFF2447 0.73 -3.9 28,613 - GFF2447 0.74 -2.1 28,613 - GFF2447 0.74 -2.7 28,613 - GFF2447 0.74 -2.5 28,613 - GFF2447 0.74 -0.9 28,639 + GFF2447 0.76 -1.4 28,639 + GFF2447 0.76 -2.2 28,640 - GFF2447 0.76 -1.8 28,640 - GFF2447 0.76 -4.2 28,640 - GFF2447 0.76 -3.0 28,801 + -3.0 28,801 + -0.7 28,801 + -4.8 28,802 - -2.0 28,802 - -3.1 29,037 + GFF2448 0.22 +0.6 29,116 + GFF2448 0.35 +0.7 29,319 + GFF2448 0.70 +0.0 29,320 - GFF2448 0.70 +0.2 29,320 - GFF2448 0.70 -0.2 29,320 - GFF2448 0.70 +0.4 29,320 - GFF2448 0.70 +0.2 29,320 - GFF2448 0.70 -0.0 29,329 - GFF2448 0.72 +0.1 29,650 + GFF2449 0.22 -0.8 29,650 + GFF2449 0.22 +0.5 29,650 + GFF2449 0.22 +1.1 29,650 + GFF2449 0.22 +0.3 29,650 + GFF2449 0.22 +1.3 29,650 + GFF2449 0.22 +0.3 29,650 + GFF2449 0.22 -0.3 29,651 - GFF2449 0.22 +0.1 29,689 + GFF2449 0.28 -0.5 29,689 + GFF2449 0.28 +0.9 29,689 + GFF2449 0.28 +0.4 29,689 + GFF2449 0.28 -0.0 29,690 - GFF2449 0.28 +0.2 29,959 + GFF2449 0.67 -0.2 29,959 + GFF2449 0.67 -0.4 29,959 + GFF2449 0.67 -0.2 30,025 + GFF2449 0.76 +0.4 30,025 + GFF2449 0.76 -0.2 30,026 - GFF2449 0.76 -0.2 30,026 - GFF2449 0.76 +0.0 30,199 + -0.0 30,230 + +0.3 30,230 + +0.1 30,231 - -0.1 30,231 - +0.4 30,270 - -1.1 30,270 - -0.4 30,270 - +0.5 30,323 + -1.1 30,323 + +0.8 30,324 - -0.4 30,324 - -0.4 30,376 + +0.5 30,377 - +0.1
Or see this region's nucleotide sequence